CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
nasonia_NCBI_hmm320104
(
Nasonia vitripennis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
nasonia_NCBI_hmm320104
T32209_0.6
DroSpeGe (2008-Jul-18)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
nasonia_NCBI_hmm320104
RRM
224
294
IFCGDLGNDVTDEMLVRVFGKYPSFQKAKVVRDKRTNKTKGFGFVSFKDPQDFIKAMKEMNVHTITSCIQK
Links
Other
RRM
family RBPs
Other
Nasonia vitripennis
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm2520
Apis mellifera
amel4_ncbi_hmm2520
I
0.887
PHUM106890
Pediculus humanus
PHUM106890
I
0.803
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.746
BGIBMGA005213
Bombyx mori
BGIBMGA005213
I
0.732
AGAP010200
Anopheles gambiae
AGAP010200
I
0.718
DGIL_AUG5s15230g22t1
Acyrtosiphon pisum
DGIL_AUG5s15230g22t1
I
0.704
AAEL010642
Aedes aegypti
AAEL010642
I
0.704