CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AGAP010200
(
Anopheles gambiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AGAP010200
T32547_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG2931
M138_0.6
Drosophila melanogaster
DACUAAG
RNAcompete
Ray et al.(2013)
RNCMPT00147
0.873
ENSXETG00000017599
M237_0.6
Xenopus tropicalis
WACUAC
RNAcompete
Ray et al.(2013)
RNCMPT00282
0.775
RBM42
M142_0.6
Homo sapiens
AACUAMG
RNAcompete
Ray et al.(2013)
RNCMPT00151
0.746
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AGAP010200-PA
RRM
222
292
IFCGDLGNDVNDELLTRTFNKYPSFQRAKVIRDKRTSKSKGYGFVSFKDPQDFIRAMKEMDGRYVGSRPIK
Links
Other
RRM
family RBPs
Other
Anopheles gambiae
RBPs
75 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAEL010642
Aedes aegypti
AAEL010642
I
0.986
GA15528-RA
Drosophila pseudoobscura
FBgn0075545
I
0.887
GH22277
Drosophila grimshawi
FBgn0129737
I
0.887
GL22151
Drosophila persimilis
FBgn0159743
I
0.887
GK12952
Drosophila willistoni
FBgn0214961
I
0.887
GJ22705
Drosophila virilis
FBgn0209809
I
0.887
GM10617
Drosophila sechellia
FBgn0165563
I
0.873
BGIBMGA005213
Bombyx mori
BGIBMGA005213
I
0.873
CG2931
Drosophila melanogaster
FBgn0037342
D
0.873
GE24162
Drosophila yakuba
FBgn0241294
I
0.873
GF11626
Drosophila ananassae
FBgn0088666
I
0.873
GD19605
Drosophila simulans
FBgn0191097
I
0.859
GG10948
Drosophila erecta
FBgn0103251
I
0.859
GI23084
Drosophila mojavensis
FBgn0145811
I
0.859
CPIJ005997
Culex quinquefasciatus
CPIJ005997
I
0.845
CpipJ_CPIJ005997
Culex pipiens
CpipJ_CPIJ005997
I
0.845
amel4_ncbi_hmm2520
Apis mellifera
amel4_ncbi_hmm2520
I
0.831
PHUM106890
Pediculus humanus
PHUM106890
I
0.831
ENSXETG00000017599
Xenopus tropicalis
ENSXETG00000017599
D
0.775
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.775
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.775
e_gw1.30.201.1
Daphnia pulex
e_gw1.30.201.1
I
0.761
AAI29698
Xenopus laevis
AAI29698
I
0.761
RBM42
Anolis carolinensis
ENSACAG00000005495
I
0.761
A2VDB3
Xenopus laevis
A2VDB3
I
0.761
rbm42
Danio rerio
ENSDARG00000039910
I
0.761
Minc13155
Meloidogyne incognita
Minc13155
I
0.761
DGIL_AUG5s15230g22t1
Acyrtosiphon pisum
DGIL_AUG5s15230g22t1
I
0.746
RBM42
Takifugu rubripes
ENSTRUG00000004663
I
0.746
RBM42
Tetraodon nigroviridis
ENSTNIG00000011669
I
0.746
LOAG_04208
Loa loa
LOAG_04208
I
0.746
Ame_R009099
Ailuropoda melanoleuca
Ame_R009099
I
0.746
Bm1_40380
Brugia malayi
Bm1_40380
I
0.746
WUBG_05387
Wuchereria bancrofti
WUBG_05387
I
0.746
RBM42
Tarsius syrichta
ENSTSYG00000014688
I
0.746
RBM42
Microcebus murinus
ENSMICG00000009880
I
0.746
RBM42
Canis familiaris
ENSCAFG00000006925
I
0.746
RBM42
Spermophilus tridecemlineatus
ENSSTOG00000013050
I
0.746
RBM42_BOVIN
Bos taurus
ENSBTAG00000013440
I
0.746
RBM42
Callithrix jacchus
ENSCJAG00000010220
I
0.746
RBM42
Myotis lucifugus
ENSMLUG00000011334
I
0.746
ENSMEUG00000016300
Macropus eugenii
ENSMEUG00000016300
I
0.746
RBM42
Gorilla gorilla
ENSGGOG00000009972
I
0.746
LOC100051102
Equus caballus
ENSECAG00000018215
I
0.746
RBM42
Cavia porcellus
ENSCPOG00000012365
I
0.746
RBM42
Erinaceus europaeus
ENSEEUG00000004841
I
0.746
RBM42
Homo sapiens
ENSG00000126254
D
0.746
RBM42
Gasterosteus aculeatus
ENSGACG00000004170
I
0.746
RBM42
Monodelphis domestica
ENSMODG00000013957
I
0.746
RBM42
Macaca mulatta
ENSMMUG00000018954
I
0.746
RBM42
Pteropus vampyrus
ENSPVAG00000012815
I
0.746
RBM42
Pan troglodytes
ENSPTRG00000010852
I
0.746
Rbm42
Rattus norvegicus
ENSRNOG00000024278
I
0.746
RBM42
Sorex araneus
ENSSARG00000010724
I
0.746
RBM42
Sus scrofa
ENSSSCG00000002905
I
0.746
Rbm42
Mus musculus
ENSMUSG00000036733
I
0.746
ENSPPYG00000009871
Pongo pygmaeus
ENSPPYG00000009871
I
0.746
RBM42
Otolemur garnettii
ENSOGAG00000004144
I
0.746
RBM42
Oryctolagus cuniculus
ENSOCUG00000003337
I
0.746
RBM42
Procavia capensis
ENSPCAG00000013053
I
0.746
RBM42
Ochotona princeps
ENSOPRG00000001229
I
0.746
RBM42
Oryzias latipes
ENSORLG00000003387
I
0.746
estExt_Genewise1Plus.C_1180017
Capitella teleta
estExt_Genewise1Plus.C_1180017
I
0.732
ENSCING00000006773
Ciona intestinalis
ENSCING00000006773
I
0.718
SPPG_03010
Spizellomyces punctatus
SPPG_03010
I
0.718
CRE29329
Caenorhabditis remanei
CRE29329
I
0.718
tag-262
Caenorhabditis elegans
Y54H5A.3
I
0.718
CBG21313
Caenorhabditis briggsae
CBG21313
I
0.718
Ppa-tag-262
Pristionchus pacificus
PPA14507
I
0.718
nasonia_NCBI_hmm320104
Nasonia vitripennis
nasonia_NCBI_hmm320104
N
0.718
CBN12017
Caenorhabditis brenneri
CBN12017
I
0.718
AAI29577
Xenopus laevis
AAI29577
I
0.718
e_gw1.16.225.1
Lottia gigantea
e_gw1.16.225.1
I
0.704
e_gw.92.129.1
Nematostella vectensis
e_gw.92.129.1
I
0.704
CJA09414
Caenorhabditis japonica
CJA09414
I
0.704