e_gw1.30.201.1 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 e_gw1.30.201.1 T49932_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
RBM42
M142_0.6 		Homo sapiens AACUAMG RNAcompete
Ray et al.(2013)
RNCMPT00151 		0.789
ENSXETG00000017599
M237_0.6 		Xenopus tropicalis WACUAC RNAcompete
Ray et al.(2013)
RNCMPT00282 		0.761
CG2931
M138_0.6 		Drosophila melanogaster DACUAAG RNAcompete
Ray et al.(2013)
RNCMPT00147 		0.746
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.30.201.1 RRM 31 101

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

75 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
amel4_ncbi_hmm2520 Apis mellifera amel4_ncbi_hmm2520 I 0.845
PHUM106890 Pediculus humanus PHUM106890 I 0.803
estExt_fgenesh2_pg.C_7640002 Branchiostoma floridae estExt_fgenesh2_pg.C_7640002 I 0.803
estExt_fgenesh2_pg.C_360096 Branchiostoma floridae estExt_fgenesh2_pg.C_360096 I 0.803
RBM42 Macaca mulatta ENSMMUG00000018954 I 0.789
RBM42 Monodelphis domestica ENSMODG00000013957 I 0.789
RBM42 Oryctolagus cuniculus ENSOCUG00000003337 I 0.789
RBM42 Microcebus murinus ENSMICG00000009880 I 0.789
Rbm42 Mus musculus ENSMUSG00000036733 I 0.789
RBM42 Gorilla gorilla ENSGGOG00000009972 I 0.789
LOC100051102 Equus caballus ENSECAG00000018215 I 0.789
RBM42 Erinaceus europaeus ENSEEUG00000004841 I 0.789
RBM42 Homo sapiens ENSG00000126254 D 0.789
RBM42 Otolemur garnettii ENSOGAG00000004144 I 0.789
ENSMEUG00000016300 Macropus eugenii ENSMEUG00000016300 I 0.789
RBM42 Procavia capensis ENSPCAG00000013053 I 0.789
RBM42 Sorex araneus ENSSARG00000010724 I 0.789
RBM42 Sus scrofa ENSSSCG00000002905 I 0.789
RBM42 Spermophilus tridecemlineatus ENSSTOG00000013050 I 0.789
RBM42 Tarsius syrichta ENSTSYG00000014688 I 0.789
Rbm42 Rattus norvegicus ENSRNOG00000024278 I 0.789
RBM42 Pteropus vampyrus ENSPVAG00000012815 I 0.789
RBM42 Cavia porcellus ENSCPOG00000012365 I 0.789
ENSPPYG00000009871 Pongo pygmaeus ENSPPYG00000009871 I 0.789
RBM42 Pan troglodytes ENSPTRG00000010852 I 0.789
RBM42 Ochotona princeps ENSOPRG00000001229 I 0.789
RBM42 Myotis lucifugus ENSMLUG00000011334 I 0.789
RBM42_BOVIN Bos taurus ENSBTAG00000013440 I 0.789
RBM42 Callithrix jacchus ENSCJAG00000010220 I 0.789
RBM42 Canis familiaris ENSCAFG00000006925 I 0.789
Ame_R009099 Ailuropoda melanoleuca Ame_R009099 I 0.789
e_gw1.16.225.1 Lottia gigantea e_gw1.16.225.1 I 0.775
76581 Helobdella robusta 76581 I 0.775
AAEL010642 Aedes aegypti AAEL010642 I 0.775
RBM42 Anolis carolinensis ENSACAG00000005495 I 0.775
RBM42 Oryzias latipes ENSORLG00000003387 I 0.761
GH22277 Drosophila grimshawi FBgn0129737 I 0.761
GA15528-RA Drosophila pseudoobscura FBgn0075545 I 0.761
Minc13155 Meloidogyne incognita Minc13155 I 0.761
RBM42 Tetraodon nigroviridis ENSTNIG00000011669 I 0.761
GL22151 Drosophila persimilis FBgn0159743 I 0.761
RBM42 Takifugu rubripes ENSTRUG00000004663 I 0.761
ENSXETG00000017599 Xenopus tropicalis ENSXETG00000017599 D 0.761
AGAP010200 Anopheles gambiae AGAP010200 I 0.761
RBM42 Gasterosteus aculeatus ENSGACG00000004170 I 0.761
ENSCING00000006773 Ciona intestinalis ENSCING00000006773 I 0.761
Aqu1.218430 Amphimedon queenslandica Aqu1.218430 I 0.761
GK12952 Drosophila willistoni FBgn0214961 I 0.761
GJ22705 Drosophila virilis FBgn0209809 I 0.761
BGIBMGA005213 Bombyx mori BGIBMGA005213 I 0.761
GF11626 Drosophila ananassae FBgn0088666 I 0.746
estExt_Genewise1Plus.C_1180017 Capitella teleta estExt_Genewise1Plus.C_1180017 I 0.746
GM10617 Drosophila sechellia FBgn0165563 I 0.746
GE24162 Drosophila yakuba FBgn0241294 I 0.746
CG2931 Drosophila melanogaster FBgn0037342 D 0.746
A2VDB3 Xenopus laevis A2VDB3 I 0.746
WUBG_05387 Wuchereria bancrofti WUBG_05387 I 0.746
ENSMEUG00000003054 Macropus eugenii ENSMEUG00000003054 I 0.746
rbm42 Danio rerio ENSDARG00000039910 I 0.746
LOAG_04208 Loa loa LOAG_04208 I 0.746
AAI29698 Xenopus laevis AAI29698 I 0.746
Bm1_40380 Brugia malayi Bm1_40380 I 0.746
nasonia_NCBI_hmm320104 Nasonia vitripennis nasonia_NCBI_hmm320104 N 0.746
AAI29577 Xenopus laevis AAI29577 I 0.732
GD19605 Drosophila simulans FBgn0191097 I 0.732
GI23084 Drosophila mojavensis FBgn0145811 I 0.732
GG10948 Drosophila erecta FBgn0103251 I 0.732
DGIL_AUG5s15230g22t1 Acyrtosiphon pisum DGIL_AUG5s15230g22t1 I 0.732
Ppa-tag-262 Pristionchus pacificus PPA14507 I 0.718
CJA09414 Caenorhabditis japonica CJA09414 I 0.718
e_gw.92.129.1 Nematostella vectensis e_gw.92.129.1 I 0.718
CBG21313 Caenorhabditis briggsae CBG21313 I 0.704
CBN12017 Caenorhabditis brenneri CBN12017 I 0.704
CRE29329 Caenorhabditis remanei CRE29329 I 0.704
tag-262 Caenorhabditis elegans Y54H5A.3 I 0.704