CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NFIA_067190
(
Neosartorya fischeri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
CADNFIAG00005682
T33810_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CADNFIAP00005525
RRM
1
31
MNGFGFIEYEDAMDARDVVPDGSDFKGERLT
CADNFIAP00005525
RRM
63
127
MLVSGLPETSWQDLKDFARQSGLDVVYSETGREQGRGFVEFETAADLKTAIDKLDGREFKGSRVS
Links
Other
RRM
family RBPs
Other
Neosartorya fischeri
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AFUA_3G10100
Aspergillus fumigatus
CADAFUAG00005849
N
0.897
PMAA_020170
Penicillium marneffei
PMAA_020170
N
0.838
BDBG_06361
Blastomyces dermatitidis
BDBG_06361
N
0.835
fgenesh1_pm.00168_#_248
Aspergillus carbonarius
fgenesh1_pm.00168_#_248
N
0.719
An16g03890
Aspergillus niger
CADANGAG00012860
N
0.711
ACLA_037960
Aspergillus clavatus
CADACLAG00003195
N
0.703