fgenesh1_pm.00168_#_248 (Aspergillus carbonarius)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.00168_#_248 T56579_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.00168_#_248 RRM 9 71
fgenesh1_pm.00168_#_248 RRM 103 167

Links

Other RRM family RBPs
Other Aspergillus carbonarius RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
An16g03890 Aspergillus niger CADANGAG00012860 N 0.992
AO090003000544 Aspergillus oryzae CADAORAG00001164 N 0.953
AFLA_032760 Aspergillus flavus CADAFLAG00002651 N 0.931
ACLA_037960 Aspergillus clavatus CADACLAG00003195 N 0.922
ANIA_04978 Aspergillus nidulans CADANIAG00005417 N 0.908
Pc13g10700 Penicillium chrysogenum Pc13g10700 N 0.868
CIMG_03560 Coccidioides immitis CIMG_03560 N 0.847
CPSG_02395 Coccidioides posadasii CPSG_02395 N 0.847
TEQG_05050 Trichophyton equinum TEQG_05050 N 0.809
GLRG_08760 Colletotrichum graminicola GLRG_08760 N 0.809
AFUA_3G10100 Aspergillus fumigatus CADAFUAG00005849 N 0.805
SS1G_14437 Sclerotinia sclerotiorum SS1G_14437 N 0.805
BC1G_09648 Botrytis cinerea BC1G_09648 N 0.797
VDAG_10099 Verticillium dahliae VDAG_10099 N 0.794
estExt_fgenesh2_kg.C_20245 Neurospora tetrasperma estExt_fgenesh2_kg.C_20245 N 0.788
estExt_fgenesh3_kg.C_60024 Neurospora discreta estExt_fgenesh3_kg.C_60024 N 0.788
NCU07069 Neurospora crassa NCU07069 N 0.788
CHGG_09128 Chaetomium globosum CHGG_09128 N 0.785
estExt_fgenesh5_pg.C_160051 Trichoderma reesei estExt_fgenesh5_pg.C_160051 N 0.782
estExt_Genewise1.C_90037 Cryphonectria parasitica estExt_Genewise1.C_90037 N 0.777
Pa_4_8210 Podospora anserina Pa_4_8210 N 0.777
estExt_Genewise1.C_21744 Trichoderma virens estExt_Genewise1.C_21744 N 0.774
fgenesh2_kg.10__63__CBWT_CBYP_CBYT_CCAH_1370_0_CBYT4195.b1 Trichoderma atroviride fgenesh2_kg.10__63__CBWT_CBYP_CBYT_CCAH_1370_0_CBYT4195.b1 N 0.774
e_gw1.5.1788.1 Thielavia terrestris e_gw1.5.1788.1 N 0.769
FVEG_03827 Fusarium verticillioides FVEG_03827 N 0.767
FOXG_05959 Fusarium oxysporum FOXG_05959 N 0.767
estExt_Genewise1Plus.C_51423 Myceliophthora thermophila estExt_Genewise1Plus.C_51423 N 0.765
e_gw1.18.2147.1 Nectria haematococca e_gw1.18.2147.1 N 0.763
TESG_02526 Trichophyton tonsurans TESG_02526 N 0.760
PTRG_11856 Pyrenophora tritici repentis PTRG_11856 N 0.759
HCAG_00086 Histoplasma capsulatum HCAG_00086 N 0.750
AB02127.1 Alternaria brassicicola AB02127.1 N 0.748
NFIA_067190 Neosartorya fischeri CADNFIAG00005682 N 0.719
estExt_fgenesh1_pm.C_chr_20271 Mycosphaerella graminicola estExt_fgenesh1_pm.C_chr_20271 N 0.715
estExt_Genewise1Plus.C_80545 Mycosphaerella fijiensis estExt_Genewise1Plus.C_80545 N 0.715