CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSACAG00000004096
(
Anolis carolinensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSACAG00000004096
T34624_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSACAP00000003968
RRM
4
64
VYIGHLSNQAHKRNMEPFKGYGKIVEVDLKNGYGFLEFGDVCDADDAVHELNGKDLCGDHV
ENSACAP00000003968
RRM
108
170
ENLTGCCNWQDLKDYMHQAGEVTYADAHNGRKNEGVIEFKSYSDMKRALENLDGTEVNGRKVR
Links
Other
RRM
family RBPs
Other
Anolis carolinensis
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRSF4
Meleagris gallopavo
ENSMGAG00000002400
I
0.783
SRSF4
Ochotona princeps
ENSOPRG00000010098
I
0.775
SRSF4
Oryctolagus cuniculus
ENSOCUG00000001837
I
0.775
A7MB38_BOVIN
Bos taurus
ENSBTAG00000013309
I
0.775
SRSF4
Procavia capensis
ENSPCAG00000009879
I
0.775
Srsf4
Mus musculus
ENSMUSG00000028911
I
0.775
ENSPPYG00000001629
Pongo pygmaeus
ENSPPYG00000001629
I
0.775
SRSF4
Tursiops truncatus
ENSTTRG00000002572
I
0.775
Ame_R018370
Ailuropoda melanoleuca
Ame_R018370
I
0.775
SRSF4
Sus scrofa
ENSSSCG00000003588
I
0.775
Sfrs4
Rattus norvegicus
ENSRNOG00000010007
I
0.775
SRSF4
Pan troglodytes
ENSPTRG00000000445
I
0.775
SRSF4
Macaca mulatta
ENSMMUG00000007110
I
0.775
SRSF4
Monodelphis domestica
ENSMODG00000011052
I
0.775
SRSF4
Erinaceus europaeus
ENSEEUG00000008479
I
0.775
SRSF4
Cavia porcellus
ENSCPOG00000007263
I
0.775
LOC100402973
Callithrix jacchus
ENSCJAG00000009971
I
0.775
SRSF4
Homo sapiens
ENSG00000116350
I
0.775
SRSF4
Dasypus novemcinctus
ENSDNOG00000000968
I
0.775
SRSF4
Loxodonta africana
ENSLAFG00000002575
I
0.775
SRSF4
Tarsius syrichta
ENSTSYG00000007903
I
0.767
Srsf4
Dipodomys ordii
ENSDORG00000002459
I
0.767
SRSF4
Takifugu rubripes
ENSTRUG00000011891
I
0.729
SRSF4
Tetraodon nigroviridis
ENSTNIG00000000115
I
0.729
SRSF4
Myotis lucifugus
ENSMLUG00000014770
I
0.729
SRSF4
Tetraodon nigroviridis
ENSTNIG00000005573
I
0.729
SRSF4
Oryzias latipes
ENSORLG00000009430
I
0.721
SRSF4
Gasterosteus aculeatus
ENSGACG00000002389
I
0.721
ENSCJAG00000010895
Callithrix jacchus
ENSCJAG00000010895
N
0.713
ENSCJAG00000031736
Callithrix jacchus
ENSCJAG00000031736
N
0.713
SRSF4
Gorilla gorilla
ENSGGOG00000002444
N
0.709