CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RDM1
(
Choloepus hoffmanni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCHOG00000010041
T35318_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000008892
RRM
1
58
HSLFTVFSQFGLLCLIRVFSNSAVARPGYYAIIKFFSARDAHIAQKACDQKLLFQKSP
Links
Other
RRM
family RBPs
Other
Choloepus hoffmanni
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RDM1
Pteropus vampyrus
ENSPVAG00000001116
N
0.783
RDM1
Felis catus
ENSFCAG00000003868
N
0.783
RDM1
Homo sapiens
ENSG00000187456
N
0.733
RDM1
Erinaceus europaeus
ENSEEUG00000006127
N
0.733
RDM1
Loxodonta africana
ENSLAFG00000029300
N
0.726
RDM1
Pan troglodytes
ENSPTRG00000009031
N
0.721
LOC100063820
Equus caballus
ENSECAG00000022182
N
0.719
Ame_R020790
Ailuropoda melanoleuca
Ame_R020790
N
0.719
RDM1
Macaca mulatta
ENSMMUG00000006847
N
0.717
RDM1
Otolemur garnettii
ENSOGAG00000011332
N
0.708
RDM1
Bos taurus
ENSBTAG00000000030
N
0.703
RDM1
Tupaia belangeri
ENSTBEG00000010030
N
0.700