CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RDM1
(
Homo sapiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSG00000187456
T37339_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000293273
RRM
27
90
TAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSP
ENSP00000378035
RRM
8
68
PQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPV
ENSP00000378036
RRM
27
90
TAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSP
ENSP00000378037
RRM
8
67
PQHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSP
ENSP00000391290
RRM
27
90
TAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSP
ENSP00000393620
RRM
27
91
TAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSPV
ENSP00000397431
RRM
27
90
TAEALHHSLFTAFSQFGLLYSVRVFPNAAVAHPGFYAVIKFYSARAAHRAQKACDRKQLFQKSP
Links
Other
RRM
family RBPs
Other
Homo sapiens
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000008198
Pongo pygmaeus
ENSPPYG00000008198
N
1.000
RDM1
Pan troglodytes
ENSPTRG00000009031
N
1.000
RDM1
Macaca mulatta
ENSMMUG00000006847
N
0.984
RDM1
Gorilla gorilla
ENSGGOG00000010584
N
0.984
LOC100388328
Callithrix jacchus
ENSCJAG00000015031
N
0.953
LOC100063820
Equus caballus
ENSECAG00000022182
N
0.922
RDM1
Bos taurus
ENSBTAG00000000030
N
0.891
RDM1
Pteropus vampyrus
ENSPVAG00000001116
N
0.883
RDM1
Loxodonta africana
ENSLAFG00000029300
N
0.844
RDM1
Felis catus
ENSFCAG00000003868
N
0.839
RDM1
Otolemur garnettii
ENSOGAG00000011332
N
0.831
RDM1
Macropus eugenii
ENSMEUG00000015826
N
0.812
Ame_R020790
Ailuropoda melanoleuca
Ame_R020790
N
0.812
Rdm1
Mus musculus
ENSMUSG00000010362
N
0.812
RDM1
Oryctolagus cuniculus
ENSOCUG00000022704
N
0.800
Rdm1
Rattus norvegicus
ENSRNOG00000020751
N
0.797
RDM1
Erinaceus europaeus
ENSEEUG00000006127
N
0.790
ENSSSCG00000017574
Sus scrofa
ENSSSCG00000017574
N
0.790
RDM1
Tupaia belangeri
ENSTBEG00000010030
N
0.774
RDM1
Monodelphis domestica
ENSMODG00000011101
N
0.773
RDM1
Choloepus hoffmanni
ENSCHOG00000010041
N
0.733
RDM1
Cavia porcellus
ENSCPOG00000001495
N
0.719