CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ENSCING00000006015
(
Ciona intestinalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCING00000006015
T35406_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCINP00000012532
RRM
106
176
LFVSRINYDTTESKLRREFETYGKIRKVTIVKDVATGKPRGYAFVEFDRERDMHTAYKSADGKKIDGRRVL
Links
Other
RRM
family RBPs
Other
Ciona intestinalis
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCSAVG00000010109
Ciona savignyi
ENSCSAVG00000010109
I
0.811
snrnp70
Danio rerio
ENSDARG00000077126
I
0.730
ISCW021751
Ixodes scapularis
ISCW021751
I
0.716
AGAP006755
Anopheles gambiae
AGAP006755
I
0.703
SNRNP70
Gasterosteus aculeatus
ENSGACG00000000448
I
0.703
SNRNP70
Takifugu rubripes
ENSTRUG00000009202
I
0.703