CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCSAVG00000011376
(
Ciona savignyi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCSAVG00000011376
T36024_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCSAVP00000019399
RRM
9
71
IFIGRLSNRATEADVEKFFKGFGRIREVKLKTGFGFVEFEDNRDAEDAVYEMNNQSLCGERVT
ENSCSAVP00000019399
RRM
130
195
VIVENLSTKVSWQDLKDYVRQAGDVSFAEAHHAVRNEGVVDFTSYDDMKTAIDQLDNTELGGRKIR
Links
Other
RRM
family RBPs
Other
Ciona savignyi
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCSAVG00000002581
Ciona savignyi
ENSCSAVG00000002581
I
0.752
ENSCING00000012370
Ciona intestinalis
ENSCING00000012370
I
0.752
ENSCING00000004873
Ciona intestinalis
ENSCING00000004873
I
0.752