ENSCING00000012370 (Ciona intestinalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCING00000012370 T35432_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6
Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335
0.713
B52
M126_0.6
Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134
0.713
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000010229 RRM 6 68
ENSCINP00000010229 RRM 131 196

Links

Other RRM family RBPs
Other Ciona intestinalis RBPs

117 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity
Action
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 1.000
ENSCSAVG00000002581 Ciona savignyi ENSCSAVG00000002581 I 0.946
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.767
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.767
Srsf4 Mus musculus ENSMUSG00000028911 I 0.767
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.767
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.767
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.767
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.767
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.767
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.767
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.767
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.767
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.767
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.767
SRSF4 Homo sapiens ENSG00000116350 I 0.767
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.767
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.767
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.767
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.767
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.767
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.767
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.767
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.760
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.760
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.760
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.760
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.760
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.760
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.752
ENSCSAVG00000011376 Ciona savignyi ENSCSAVG00000011376 N 0.752
ENSCING00000008080 Ciona intestinalis ENSCING00000008080 N 0.752
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.744
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.744
AAH71160 Xenopus laevis AAH71160 I 0.744
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.744
ISCW010321 Ixodes scapularis ISCW010321 I 0.736
AAH44085 Xenopus laevis AAH44085 I 0.736
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.729
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.729
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.729
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.729
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.729
PHUM290500 Pediculus humanus PHUM290500 I 0.729
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.729
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.721
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.721
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.721
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.721
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.721
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.721
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.721
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.721
Srsf6 Mus musculus ENSMUSG00000016921 I 0.721
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.721
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.721
AGAP004592 Anopheles gambiae AGAP004592 I 0.721
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.721
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.721
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.713
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.713
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.713
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.713
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.713
ISCW014220 Ixodes scapularis ISCW014220 I 0.713
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.713
B52 Drosophila melanogaster FBgn0004587 D 0.713
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.713
GK13948 Drosophila willistoni FBgn0215954 I 0.713
GF17608 Drosophila ananassae FBgn0094626 I 0.713
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.713
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.713
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.713
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.713
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.713
LOC100053264 Equus caballus ENSECAG00000026873 I 0.713
Srsf5 Mus musculus ENSMUSG00000021134 I 0.713
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.713
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.713
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.713
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.713
SRSF6 Homo sapiens ENSG00000124193 I 0.713
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.713
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.713
SRSF5 Felis catus ENSFCAG00000008848 I 0.713
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.713
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.713
AAH46668 Xenopus laevis AAH46668 I 0.713
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.713
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.713
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.713
SRSF5 Homo sapiens ENSG00000100650 D 0.713
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.713
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.713
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.713
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.713
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.713
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.713
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.713
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.713
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.705
SRSF6 Takifugu rubripes ENSTRUG00000003244 I 0.705
SRSF5 Oryzias latipes ENSORLG00000009268 I 0.705
srsf5a Danio rerio ENSDARG00000029818 I 0.705
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.705
SRSF5 Echinops telfairi ENSETEG00000020396 I 0.705
ENSGACG00000011761 Gasterosteus aculeatus ENSGACG00000011761 I 0.705
SRSF5 Loxodonta africana ENSLAFG00000005260 I 0.705
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.705
SRSF6 Tetraodon nigroviridis ENSTNIG00000001692 I 0.705
GL23543 Drosophila persimilis FBgn0161133 I 0.705
GJ24113 Drosophila virilis FBgn0211197 I 0.705
GI22065 Drosophila mojavensis FBgn0144794 I 0.705
GH18528 Drosophila grimshawi FBgn0125995 I 0.705
PACS2 Takifugu rubripes ENSTRUG00000010740 I 0.705
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.705
BGIBMGA010178 Bombyx mori BGIBMGA010178 I 0.705