ENSCSAVG00000002581 (Ciona savignyi)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCSAVG00000002581 T35957_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
B52
M334_0.6 		Drosophila melanogaster GRUCAACCNGGCGACMG SELEX
Cook et al.(2011)
802_9111335 		0.729
B52
M126_0.6 		Drosophila melanogaster GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00134 		0.729
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCSAVP00000004364 RRM 6 68
ENSCSAVP00000004364 RRM 131 196
ENSCSAVP00000004365 RRM 9 71
ENSCSAVP00000004365 RRM 114 179
ENSCSAVP00000004366 RRM 6 68
ENSCSAVP00000004366 RRM 113 178

Links

Other RRM family RBPs
Other Ciona savignyi RBPs

113 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCING00000012370 Ciona intestinalis ENSCING00000012370 I 0.946
ENSCING00000004873 Ciona intestinalis ENSCING00000004873 I 0.946
SRSF4 Monodelphis domestica ENSMODG00000011052 I 0.760
SRSF4 Macaca mulatta ENSMMUG00000007110 I 0.760
SRSF4 Tarsius syrichta ENSTSYG00000007903 I 0.760
SRSF4 Sus scrofa ENSSSCG00000003588 I 0.760
SRSF4 Tursiops truncatus ENSTTRG00000002572 I 0.760
Sfrs4 Rattus norvegicus ENSRNOG00000010007 I 0.760
ENSPPYG00000001629 Pongo pygmaeus ENSPPYG00000001629 I 0.760
SRSF4 Procavia capensis ENSPCAG00000009879 I 0.760
SRSF4 Oryctolagus cuniculus ENSOCUG00000001837 I 0.760
Srsf4 Mus musculus ENSMUSG00000028911 I 0.760
SRSF4 Pan troglodytes ENSPTRG00000000445 I 0.760
SRSF4 Meleagris gallopavo ENSMGAG00000002400 I 0.760
SRSF4 Loxodonta africana ENSLAFG00000002575 I 0.760
LOC100402973 Callithrix jacchus ENSCJAG00000009971 I 0.760
SRSF4 Homo sapiens ENSG00000116350 I 0.760
SRSF4 Cavia porcellus ENSCPOG00000007263 I 0.760
A7MB38_BOVIN Bos taurus ENSBTAG00000013309 I 0.760
SRSF4 Erinaceus europaeus ENSEEUG00000008479 I 0.760
SRSF4 Dasypus novemcinctus ENSDNOG00000000968 I 0.760
Srsf4 Dipodomys ordii ENSDORG00000002459 I 0.760
Ame_R018370 Ailuropoda melanoleuca Ame_R018370 I 0.760
SRSF4 Ochotona princeps ENSOPRG00000010098 I 0.752
ENSCSAVG00000011376 Ciona savignyi ENSCSAVG00000011376 N 0.752
e_gw1.89.27.1 Lottia gigantea e_gw1.89.27.1 I 0.752
SRSF4 Oryzias latipes ENSORLG00000009430 I 0.744
srsf4 Xenopus tropicalis ENSXETG00000014380 I 0.744
SRSF4 Gasterosteus aculeatus ENSGACG00000002389 I 0.744
SRSF4 Tetraodon nigroviridis ENSTNIG00000000115 I 0.736
AAH71160 Xenopus laevis AAH71160 I 0.736
SRSF4 Tetraodon nigroviridis ENSTNIG00000005573 I 0.736
XB-GENE-5954653 Xenopus tropicalis ENSXETG00000017937 I 0.736
ENSCING00000008080 Ciona intestinalis ENSCING00000008080 N 0.736
SRSF4 Takifugu rubripes ENSTRUG00000011891 I 0.736
GF17608 Drosophila ananassae FBgn0094626 I 0.729
B52 Drosophila melanogaster FBgn0004587 D 0.729
gw.103.95.1 Nematostella vectensis gw.103.95.1 N 0.729
AAH44085 Xenopus laevis AAH44085 I 0.729
SRSF6 Anolis carolinensis ENSACAG00000002061 I 0.729
DGIL_AUG5s17730g6t1 Acyrtosiphon pisum DGIL_AUG5s17730g6t1 I 0.729
SRSF6 Pteropus vampyrus ENSPVAG00000015232 I 0.729
GK13948 Drosophila willistoni FBgn0215954 I 0.729
GJ24113 Drosophila virilis FBgn0211197 I 0.721
SFRS6_BOVIN Bos taurus ENSBTAG00000008527 I 0.721
PHUM290500 Pediculus humanus PHUM290500 I 0.721
GL23543 Drosophila persimilis FBgn0161133 I 0.721
GI22065 Drosophila mojavensis FBgn0144794 I 0.721
GA10599-RA Drosophila pseudoobscura FBgn0070656 I 0.721
GH18528 Drosophila grimshawi FBgn0125995 I 0.721
estExt_fgenesh2_pm.C_690014 Branchiostoma floridae estExt_fgenesh2_pm.C_690014 I 0.721
estExt_Genewise1Plus.C_1640045 Capitella teleta estExt_Genewise1Plus.C_1640045 I 0.721
CpipJ_CPIJ008634 Culex pipiens CpipJ_CPIJ008634 I 0.721
AAH46668 Xenopus laevis AAH46668 I 0.721
amel4_ncbi_hmm6583 Apis mellifera amel4_ncbi_hmm6583 I 0.721
SRSF6 Procavia capensis ENSPCAG00000010954 I 0.721
CPIJ008634 Culex quinquefasciatus CPIJ008634 I 0.721
AGAP004592 Anopheles gambiae AGAP004592 I 0.721
SRSF6 Macropus eugenii ENSMEUG00000014615 I 0.721
srsf6 Xenopus tropicalis ENSXETG00000025503 I 0.721
SRSF4 Myotis lucifugus ENSMLUG00000014770 I 0.721
SRSF5 Tetraodon nigroviridis ENSTNIG00000016411 I 0.721
SFRS6 Taeniopygia guttata ENSTGUG00000003455 I 0.721
SRSF6 Monodelphis domestica ENSMODG00000003107 I 0.721
Srsf6 Mus musculus ENSMUSG00000016921 I 0.721
SRSF5 Takifugu rubripes ENSTRUG00000017811 I 0.721
Sfrs6 Rattus norvegicus ENSRNOG00000006380 I 0.721
srsf5 Xenopus tropicalis ENSXETG00000002211 I 0.713
srsf5b Danio rerio ENSDARG00000027734 I 0.713
SRSF6 Gorilla gorilla ENSGGOG00000009808 I 0.713
ENSACAG00000005544 Anolis carolinensis ENSACAG00000005544 I 0.713
SRSF6 Homo sapiens ENSG00000124193 I 0.713
Srsf6 Dipodomys ordii ENSDORG00000001945 I 0.713
ENSPPYG00000011019 Pongo pygmaeus ENSPPYG00000011019 I 0.713
SRSF6 Callithrix jacchus ENSCJAG00000017888 I 0.713
estExt_Genewise1Plus.C_sca_890186 Lottia gigantea estExt_Genewise1Plus.C_sca_890186 I 0.713
XP_002200515.1 Taeniopygia guttata ENSTGUG00000011492 I 0.713
SRSF6 Dasypus novemcinctus ENSDNOG00000008410 I 0.713
ENSCJAG00000031736 Callithrix jacchus ENSCJAG00000031736 N 0.705
SRSF5 Cavia porcellus ENSCPOG00000005949 I 0.705
SRSF5 Otolemur garnettii ENSOGAG00000015122 I 0.705
A6MLI3_CALJA Callithrix jacchus ENSCJAG00000014884 I 0.705
SRSF5 Canis familiaris ENSCAFG00000016589 I 0.705
SRSF5 Felis catus ENSFCAG00000008848 I 0.705
SRSF5 Homo sapiens ENSG00000100650 D 0.705
ENSCJAG00000010895 Callithrix jacchus ENSCJAG00000010895 N 0.705
LOC100053264 Equus caballus ENSECAG00000026873 I 0.705
A6H7B7_BOVIN Bos taurus ENSBTAG00000011596 I 0.705
SRSF5 Anolis carolinensis ENSACAG00000005143 I 0.705
estExt_fgenesh1_pg.C_3000025 Capitella teleta estExt_fgenesh1_pg.C_3000025 I 0.705
SRSF5 Myotis lucifugus ENSMLUG00000011939 I 0.705
SRSF6 Microcebus murinus ENSMICG00000008537 I 0.705
SRSF5 Tursiops truncatus ENSTTRG00000003318 I 0.705
SRSF5 Vicugna pacos ENSVPAG00000006448 I 0.705
SRSF5 Tarsius syrichta ENSTSYG00000007786 I 0.705
SRSF5 Macaca mulatta ENSMMUG00000022407 I 0.705
Sfrs5 Rattus norvegicus ENSRNOG00000005513 I 0.705
SRSF5 Sus scrofa ENSSSCG00000002312 I 0.705
SRSF5 Monodelphis domestica ENSMODG00000011362 I 0.705
SFRS5 Taeniopygia guttata ENSTGUG00000011425 I 0.705
SRSF5 Gorilla gorilla ENSGGOG00000016462 I 0.705
Srsf5 Mus musculus ENSMUSG00000021134 I 0.705
Ame_R004936 Ailuropoda melanoleuca Ame_R004936 I 0.705
SRSF6 Gasterosteus aculeatus ENSGACG00000006084 I 0.705
XP_001180940.1 Strongylocentrotus purpuratus XP_001180940.1 I 0.705
XP_798746.1 Strongylocentrotus purpuratus XP_798746.1 I 0.705
ENSPPYG00000005945 Pongo pygmaeus ENSPPYG00000005945 I 0.705
estExt_fgenesh2_pg.C_920027 Branchiostoma floridae estExt_fgenesh2_pg.C_920027 I 0.705
SRSF5 Ochotona princeps ENSOPRG00000008286 I 0.705
ISCW010321 Ixodes scapularis ISCW010321 I 0.705
SRSF5 Pan troglodytes ENSPTRG00000006488 I 0.705
SRSF5 Oryctolagus cuniculus ENSOCUG00000009274 I 0.705