eif4bb (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000010194 T36058_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
EIF4B
M292_0.6 		Homo sapiens SUYGGAM SELEX
Cook et al.(2011)
352_8846295 		0.857
EIF4B
M291_0.6 		Homo sapiens SUYGGAM SELEX
Cook et al.(2011)
351_8846295 		0.857
EIF4B
M290_0.6 		Homo sapiens SUYGGAM SELEX
Cook et al.(2011)
350_8846295 		0.857
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000008894 RRM 98 167
ENSDARP00000045774 RRM 98 167

Links

Other RRM family RBPs
Other Danio rerio RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
EIF4B Gasterosteus aculeatus ENSGACG00000008010 I 0.914
EIF4B Tetraodon nigroviridis ENSTNIG00000007192 I 0.886
EIF4B Oryzias latipes ENSORLG00000016502 I 0.886
eif4b Xenopus tropicalis ENSXETG00000001829 I 0.886
eif4ba Danio rerio ENSDARG00000017439 I 0.886
EIF4B Anolis carolinensis ENSACAG00000011869 I 0.886
EIF4B Taeniopygia guttata ENSTGUG00000003829 I 0.871
EIF4B Ornithorhynchus anatinus ENSOANG00000009940 I 0.857
EIF4B Callithrix jacchus ENSCJAG00000018176 I 0.857
XR_020585.1 Pan troglodytes ENSPTRG00000004997 I 0.857
EIF4B Tarsius syrichta ENSTSYG00000012880 I 0.857
Ame_R011610 Ailuropoda melanoleuca Ame_R011610 I 0.857
ENSPPYG00000025848 Pongo pygmaeus ENSPPYG00000025848 I 0.857
ENSGGOG00000013695 Gorilla gorilla ENSGGOG00000013695 I 0.857
EIF4B Homo sapiens ENSG00000063046 D 0.857
ENSMMUG00000001062 Macaca mulatta ENSMMUG00000001062 I 0.857
EIF4B Meleagris gallopavo ENSMGAG00000005127 I 0.857
ENSLAFG00000009534 Loxodonta africana ENSLAFG00000009534 I 0.843
Eif4b Mus musculus ENSMUSG00000058655 I 0.843
EIF4B Oryctolagus cuniculus ENSOCUG00000013484 I 0.843
Q3MHP6_BOVIN Bos taurus ENSBTAG00000006883 I 0.843
EIF4B Equus caballus ENSECAG00000024091 I 0.843
EIF4B Canis familiaris ENSCAFG00000007117 I 0.843
EIF4B Tupaia belangeri ENSTBEG00000005423 I 0.843
EIF4B Ochotona princeps ENSOPRG00000008447 I 0.843
EIF4B Spermophilus tridecemlineatus ENSSTOG00000006800 I 0.843
Eif4b Rattus norvegicus ENSRNOG00000010103 I 0.843
EIF4B Choloepus hoffmanni ENSCHOG00000001608 I 0.829
EIF4B Pteropus vampyrus ENSPVAG00000009362 I 0.829
EIF4B Vicugna pacos ENSVPAG00000007999 I 0.829
EIF4B Tursiops truncatus ENSTTRG00000002770 I 0.829
ENSCPOG00000005595 Cavia porcellus ENSCPOG00000005595 I 0.814
EIF4B Sorex araneus ENSSARG00000000838 I 0.814
ENSGGOG00000004382 Gorilla gorilla ENSGGOG00000004382 I 0.814
ENSMMUG00000008391 Macaca mulatta ENSMMUG00000008391 N 0.800
ENSCPOG00000021782 Cavia porcellus ENSCPOG00000021782 I 0.786
EIF4B Felis catus ENSFCAG00000000300 N 0.743
EIF4B Procavia capensis ENSPCAG00000001759 N 0.743
EIF4B Myotis lucifugus ENSMLUG00000013021 N 0.729