EIF4B (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000006800 T41600_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
EIF4B
M292_0.6 		Homo sapiens SUYGGAM SELEX
Cook et al.(2011)
352_8846295 		0.986
EIF4B
M291_0.6 		Homo sapiens SUYGGAM SELEX
Cook et al.(2011)
351_8846295 		0.986
EIF4B
M290_0.6 		Homo sapiens SUYGGAM SELEX
Cook et al.(2011)
350_8846295 		0.986
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000006080 RRM 47 116

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

40 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q3MHP6_BOVIN Bos taurus ENSBTAG00000006883 I 1.000
ENSLAFG00000009534 Loxodonta africana ENSLAFG00000009534 I 1.000
EIF4B Oryctolagus cuniculus ENSOCUG00000013484 I 1.000
EIF4B Ochotona princeps ENSOPRG00000008447 I 1.000
EIF4B Equus caballus ENSECAG00000024091 I 1.000
EIF4B Canis familiaris ENSCAFG00000007117 I 1.000
EIF4B Tupaia belangeri ENSTBEG00000005423 I 1.000
ENSMMUG00000001062 Macaca mulatta ENSMMUG00000001062 I 0.986
XR_020585.1 Pan troglodytes ENSPTRG00000004997 I 0.986
ENSPPYG00000025848 Pongo pygmaeus ENSPPYG00000025848 I 0.986
EIF4B Callithrix jacchus ENSCJAG00000018176 I 0.986
ENSGGOG00000013695 Gorilla gorilla ENSGGOG00000013695 I 0.986
EIF4B Homo sapiens ENSG00000063046 D 0.986
Ame_R011610 Ailuropoda melanoleuca Ame_R011610 I 0.986
EIF4B Tarsius syrichta ENSTSYG00000012880 I 0.986
EIF4B Choloepus hoffmanni ENSCHOG00000001608 I 0.986
EIF4B Vicugna pacos ENSVPAG00000007999 I 0.986
EIF4B Tursiops truncatus ENSTTRG00000002770 I 0.971
EIF4B Pteropus vampyrus ENSPVAG00000009362 I 0.971
Eif4b Rattus norvegicus ENSRNOG00000010103 I 0.971
ENSCPOG00000005595 Cavia porcellus ENSCPOG00000005595 I 0.971
Eif4b Mus musculus ENSMUSG00000058655 I 0.971
EIF4B Ornithorhynchus anatinus ENSOANG00000009940 I 0.957
EIF4B Sorex araneus ENSSARG00000000838 I 0.957
EIF4B Anolis carolinensis ENSACAG00000011869 I 0.943
ENSGGOG00000004382 Gorilla gorilla ENSGGOG00000004382 I 0.943
ENSCPOG00000021782 Cavia porcellus ENSCPOG00000021782 I 0.943
EIF4B Meleagris gallopavo ENSMGAG00000005127 I 0.929
eif4b Xenopus tropicalis ENSXETG00000001829 I 0.929
EIF4B Taeniopygia guttata ENSTGUG00000003829 I 0.914
EIF4B Gasterosteus aculeatus ENSGACG00000008010 I 0.914
ENSMMUG00000008391 Macaca mulatta ENSMMUG00000008391 N 0.914
eif4ba Danio rerio ENSDARG00000017439 I 0.900
EIF4B Felis catus ENSFCAG00000000300 N 0.886
EIF4B Procavia capensis ENSPCAG00000001759 N 0.886
EIF4B Tetraodon nigroviridis ENSTNIG00000007192 I 0.857
EIF4B Myotis lucifugus ENSMLUG00000013021 N 0.857
eif4bb Danio rerio ENSDARG00000010194 I 0.843
EIF4B Oryzias latipes ENSORLG00000016502 I 0.829
D3ZIS8_RAT Rattus norvegicus ENSRNOG00000039259 N 0.733