htatsf1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000056649 T36177_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000073630 RRM 140 217
ENSDARP00000073630 RRM 291 347

Links

Other RRM family RBPs
Other Danio rerio RBPs

34 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HTATSF1 Gasterosteus aculeatus ENSGACG00000020459 N 0.818
HTATSF1 Anolis carolinensis ENSACAG00000009346 N 0.815
HTATSF1 Tetraodon nigroviridis ENSTNIG00000016140 N 0.815
HTATSF1 Taeniopygia guttata ENSTGUG00000002099 N 0.815
HTATSF1 Ornithorhynchus anatinus ENSOANG00000011674 N 0.807
HTATSF1 Oryzias latipes ENSORLG00000002356 N 0.807
HTATSF1 Takifugu rubripes ENSTRUG00000013383 N 0.807
HTATSF1 Meleagris gallopavo ENSMGAG00000003558 N 0.807
Q5ZKD3_CHICK Gallus gallus ENSGALG00000006410 N 0.807
HTATSF1 Macropus eugenii ENSMEUG00000004133 N 0.800
XM_001362552.1 Monodelphis domestica ENSMODG00000014087 N 0.793
htatsf1 Xenopus tropicalis ENSXETG00000019749 N 0.770
AAH59346 Xenopus laevis AAH59346 N 0.748
AAH84628 Xenopus laevis AAH84628 N 0.748
Htatsf1 Dipodomys ordii ENSDORG00000006140 N 0.719
Htatsf1 Rattus norvegicus ENSRNOG00000027761 N 0.719
Htatsf1 Mus musculus ENSMUSG00000067873 N 0.719
HTATSF1 Sorex araneus ENSSARG00000005193 N 0.719
HTATSF1 Myotis lucifugus ENSMLUG00000009234 N 0.719
HTATSF1 Loxodonta africana ENSLAFG00000014307 N 0.719
HTATSF1 Dasypus novemcinctus ENSDNOG00000002254 N 0.719
HTATSF1 Oryctolagus cuniculus ENSOCUG00000012570 N 0.711
HTATSF1 Pteropus vampyrus ENSPVAG00000010281 N 0.711
LOC100054669 Equus caballus ENSECAG00000009156 N 0.704
HTATSF1 Canis familiaris ENSCAFG00000023294 N 0.704
LOC100414869 Callithrix jacchus ENSCJAG00000003676 N 0.704
HTATSF1 Cavia porcellus ENSCPOG00000010493 N 0.704
HTATSF1 Felis catus ENSFCAG00000003458 N 0.704
Ame_R008048 Ailuropoda melanoleuca Ame_R008048 N 0.704
ENSPPYG00000020765 Pongo pygmaeus ENSPPYG00000020765 N 0.704
HTATSF1 Macaca mulatta ENSMMUG00000006450 N 0.704
HTATSF1 Tursiops truncatus ENSTTRG00000002269 N 0.704
HTATSF1 Gorilla gorilla ENSGGOG00000026072 N 0.704
HTATSF1 Homo sapiens ENSG00000102241 N 0.704