ENSSTOG00000006570 (Spermophilus tridecemlineatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSSTOG00000006570 T41598_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.966
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.855
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.779
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.752
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSSTOP00000005870 RRM 15 87
ENSSTOP00000005870 RRM 104 175

Links

Other RRM family RBPs
Other Spermophilus tridecemlineatus RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.966
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.966
SF3B4 Gallus gallus ENSGALG00000013352 I 0.966
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.966
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.966
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.966
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.966
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.966
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.966
SF3B4 Homo sapiens ENSG00000143368 I 0.966
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.966
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.966
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.966
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.966
sf3b4 Danio rerio ENSDARG00000018574 D 0.966
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.966
LOC100054350 Equus caballus ENSECAG00000024737 I 0.966
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.966
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.966
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.966
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.966
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.966
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.966
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.966
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.966
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.966
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.966
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.966
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.966
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.966
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.966
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.966
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.966
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.966
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.966
AAH77458 Xenopus laevis AAH77458 I 0.959
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.959
AAH45264 Xenopus laevis AAH45264 I 0.959
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.945
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.931
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.931
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.903
ISCW010601 Ixodes scapularis ISCW010601 I 0.890
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.890
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.876
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.869
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.862
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.862
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.862
Smp_067420 Schistosoma mansoni Smp_067420 D 0.855
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.855
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.855
AAEL013795 Aedes aegypti AAEL013795 I 0.855
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.855
GJ15655 Drosophila virilis FBgn0202845 I 0.848
PHUM263440 Pediculus humanus PHUM263440 I 0.848
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.848
GH17589 Drosophila grimshawi FBgn0125059 I 0.848
GI16317 Drosophila mojavensis FBgn0139065 I 0.848
AGAP001538 Anopheles gambiae AGAP001538 I 0.841
GF20385 Drosophila ananassae FBgn0097392 I 0.841
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.841
GG19577 Drosophila erecta FBgn0111779 I 0.841
GL21313 Drosophila persimilis FBgn0158906 I 0.841
GK19717 Drosophila willistoni FBgn0221715 I 0.841
GE16738 Drosophila yakuba FBgn0234234 I 0.841
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.834
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.834
GM12470 Drosophila sechellia FBgn0167407 I 0.834
Spx Drosophila melanogaster FBgn0015818 I 0.834
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.828
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.828
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.821
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.814
99199 Helobdella robusta 99199 I 0.814
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.814
ENSBTAG00000026365 Bos taurus ENSBTAG00000026365 I 0.788
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.786
sap-49 Caenorhabditis elegans C08B11.5 D 0.779
30183.m001303 Ricinus communis 30183.m001303 I 0.779
CRE01639 Caenorhabditis remanei CRE01639 I 0.779
CBN06124 Caenorhabditis brenneri CBN06124 I 0.779
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.779
PK08238.1 Cannabis sativa PK08238.1 I 0.779
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.772
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.772
MDP0000131129 Malus x domestica MDP0000131129 I 0.772
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.772
MDP0000320945 Malus x domestica MDP0000320945 I 0.772
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.766
LOAG_01189 Loa loa LOAG_01189 I 0.766
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.766
CBG13349 Caenorhabditis briggsae CBG13349 I 0.766
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.766
CJA19238 Caenorhabditis japonica CJA19238 I 0.766
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.759
ppa007508m Prunus persica ppa007508m I 0.759
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.759
Bm1_43460 Brugia malayi Bm1_43460 I 0.759
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.752
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.752
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.752
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.752
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.752
SB01G020190 Sorghum bicolor Sb01g020190 I 0.752
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.752
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.752
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.745
Minc01580 Meloidogyne incognita Minc01580 I 0.738
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.738
Minc12926 Meloidogyne incognita Minc12926 I 0.738
Minc02568 Meloidogyne incognita Minc02568 I 0.738
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.731
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.731
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.731
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.724
AMAG_03157 Allomyces macrogynus AMAG_03157 I 0.724
gw1.5.900.1 Ostreococcus RCC809 gw1.5.900.1 I 0.724
AMAG_10429 Allomyces macrogynus AMAG_10429 I 0.724
ENSSTOG00000000684 Spermophilus tridecemlineatus ENSSTOG00000000684 I 0.710
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.710
ENSOANG00000004768 Ornithorhynchus anatinus ENSOANG00000004768 I 0.710
estExt_Genewise1Plus.C_330054 Phycomyces blakesleeanus estExt_Genewise1Plus.C_330054 I 0.710
gw1.3.260.1 Chlorella NC64A gw1.3.260.1 I 0.710
ENSDORG00000016366 Dipodomys ordii ENSDORG00000016366 I 0.703
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.703