CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RNPC3
(
Homo sapiens
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSG00000185946
T37336_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSP00000359107
RRM
29
96
LLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV
ENSP00000359107
RRM
421
496
IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV
ENSP00000391432
RRM
29
96
LLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGRLKHTAFATFPNEKAAIKALTRLHQLKLLGHTLV
ENSP00000391432
RRM
422
497
IYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMV
Links
Other
RRM
family RBPs
Other
Homo sapiens
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC100393797
Callithrix jacchus
ENSCJAG00000031625
N
1.000
RNPC3
Macaca mulatta
ENSMMUG00000018039
N
0.993
RNPC3
Oryctolagus cuniculus
ENSOCUG00000004016
N
0.993
RNPC3
Canis familiaris
ENSCAFG00000019972
N
0.986
RNPC3
Sus scrofa
ENSSSCG00000006856
N
0.979
RBM40_BOVIN
Bos taurus
ENSBTAG00000019091
N
0.979
Rnpc3
Rattus norvegicus
ENSRNOG00000017310
N
0.979
Rnpc3
Mus musculus
ENSMUSG00000027981
N
0.979
RNPC3
Loxodonta africana
ENSLAFG00000032342
N
0.958
RNPC3
Monodelphis domestica
ENSMODG00000002946
N
0.903
RNPC3
Gallus gallus
ENSGALG00000005162
N
0.868
RNPC3
Anolis carolinensis
ENSACAG00000002029
N
0.840
RNPC3
Ornithorhynchus anatinus
ENSOANG00000008220
N
0.771
rnpc3
Danio rerio
ENSDARG00000011247
N
0.736
RNPC3
Gasterosteus aculeatus
ENSGACG00000002048
N
0.736