CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM15B
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000001575
T37390_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000002059
RRM
29
100
LLISNLGSQVSDEDVEDALFHEFKKFGDVSVKLSHTPELGRIAYVNFRHPEDAKEARHAKSSRLVLGDRQLK
ENSGACP00000002059
RRM
204
273
LFIGNLDGNVAEAELRRGFDKYGVIEDVVIKRPARGQGGAYAFVKFQNLDMAHRAKVAMQGRLMGGNPIK
ENSGACP00000002059
RRM
285
348
LWVGGLGPGNSLAALAREFDRFGSIRNIDYVKGDSFAYIQYESLDASQAACTQMRGFPLGGPER
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
13 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM15B
Tetraodon nigroviridis
ENSTNIG00000002438
N
0.893
rbm15b
Xenopus tropicalis
ENSXETG00000000072
N
0.739
RBM15B
Homo sapiens
ENSG00000179837
N
0.718
RBM15B
Tursiops truncatus
ENSTTRG00000001431
N
0.718
RBM15B
Macaca mulatta
ENSMMUG00000004279
N
0.718
Ame_R007082
Ailuropoda melanoleuca
Ame_R007082
N
0.718
RBM15B
Sus scrofa
ENSSSCG00000011420
N
0.718
RBM15B
Pan troglodytes
ENSPTRG00000014972
N
0.718
RBM15B
Pteropus vampyrus
ENSPVAG00000003221
N
0.718
RBM15B
Canis familiaris
ENSCAFG00000010266
N
0.718
RBM15
Oryzias latipes
ENSORLG00000006197
N
0.714
RBM15
Gasterosteus aculeatus
ENSGACG00000007932
N
0.709
RBM15
Takifugu rubripes
ENSTRUG00000002921
N
0.704