CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RAVER1
(
Gasterosteus aculeatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGACG00000013818
T37513_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000018250
RRM
56
119
IIIKNLPSDVSNQEVHELLGNYDLKYCFVDKYKGTAFVTLLHGEQAQCAIKDFHQHVLRDREIS
ENSGACP00000018250
RRM
129
199
LCIANLPRAFTQQQFEELVRPFGNLERCFLVYSASTGHSKGYGFVEYMKKDSAARAKSELLGKQLGTRMLY
ENSGACP00000018250
RRM
218
288
LCVDRLPPSLLTAQDLRNALADTHAPIFCQLAQGQDSSFRRFTVLEFSSAEMAEEAQRLSDGRLLGGTRIR
Links
Other
RRM
family RBPs
Other
Gasterosteus aculeatus
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TYK2
Takifugu rubripes
ENSTRUG00000009121
N
0.913
RAVER1
Oryzias latipes
ENSORLG00000005458
N
0.893
RAVER1
Tursiops truncatus
ENSTTRG00000009552
N
0.709
RAVER1
Felis catus
ENSFCAG00000009435
N
0.704
RAVER1
Cavia porcellus
ENSCPOG00000001008
N
0.704
RAVER1
Canis familiaris
ENSCAFG00000017861
N
0.704
A4FUZ2_BOVIN
Bos taurus
ENSBTAG00000015721
N
0.704
RAVER1
Pteropus vampyrus
ENSPVAG00000003689
N
0.704