CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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A4FUZ2_BOVIN
(
Bos taurus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSBTAG00000015721
T34876_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSBTAP00000020887
RRM
61
124
ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAISAFHQSRLRERELS
ENSBTAP00000020887
RRM
134
204
LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY
ENSBTAP00000020887
RRM
223
293
LCVDRLPPGFSDVDALRRALSAVHTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGSHLR
ENSBTAP00000049414
RRM
61
124
ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAISAFHQSRLRERELS
ENSBTAP00000049414
RRM
134
204
LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY
ENSBTAP00000049414
RRM
223
293
LCVDRLPPGFSDVDALRRALSAVHTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGSHLR
Links
Other
RRM
family RBPs
Other
Bos taurus
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER1
Tursiops truncatus
ENSTTRG00000009552
N
0.995
RAVER1
Sus scrofa
ENSSSCG00000013650
N
0.990
RAVER1
Canis familiaris
ENSCAFG00000017861
N
0.985
RAVER1
Pteropus vampyrus
ENSPVAG00000003689
N
0.985
RAVER1
Loxodonta africana
ENSLAFG00000003664
N
0.981
Raver1
Dipodomys ordii
ENSDORG00000010106
N
0.981
RAVER1
Felis catus
ENSFCAG00000009435
N
0.981
RAVER1
Spermophilus tridecemlineatus
ENSSTOG00000003241
N
0.966
RAVER1
Microcebus murinus
ENSMICG00000010326
N
0.961
RAVER1
Cavia porcellus
ENSCPOG00000001008
N
0.961
RAVER1
Oryctolagus cuniculus
ENSOCUG00000020918
N
0.956
Raver1
Rattus norvegicus
ENSRNOG00000020710
N
0.956
RAVER1
Equus caballus
ENSECAG00000024966
N
0.951
RAVER1
Pan troglodytes
ENSPTRG00000010466
N
0.937
Raver1
Mus musculus
ENSMUSG00000010205
N
0.937
RAVER1
Homo sapiens
ENSG00000161847
N
0.937
ENSPPYG00000010514
Pongo pygmaeus
ENSPPYG00000010514
N
0.932
Ame_R009605
Ailuropoda melanoleuca
Ame_R009605
N
0.932
RAVER1
Gorilla gorilla
ENSGGOG00000006015
N
0.932
RAVER1
Macaca mulatta
ENSMMUG00000014897
N
0.888
RAVER1
Monodelphis domestica
ENSMODG00000005584
N
0.874
RAVER1
Myotis lucifugus
ENSMLUG00000012328
N
0.801
RAVER1
Macropus eugenii
ENSMEUG00000003281
N
0.772
RAVER1
Anolis carolinensis
ENSACAG00000008386
N
0.757
RAVER1
Oryzias latipes
ENSORLG00000005458
N
0.709
RAVER1
Gasterosteus aculeatus
ENSGACG00000013818
N
0.704