CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH71067
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH71067
T59512_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH71067
RRM
9
78
LFIGGLNVQTTEEGLRQHFETYGQLTDCVVVINPQTKRSRCFGFVTYSSAAEADAAVEASPHVVDGNNVE
AAH71067
RRM
100
169
LFVGGLKEEVGESDLLEHFSQFGPVEKVEVIADKLTGKKRGFGFVYFNSHDSADKAAVVKFHSVNGHRVE
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAI06306
Xenopus laevis
AAI06306
N
1.000
AAH41277
Xenopus laevis
AAH41277
N
1.000
AAH45023
Xenopus laevis
AAH45023
N
0.957
hnrnpa0
Xenopus tropicalis
ENSXETG00000003833
N
0.936
HNRNPA0
Meleagris gallopavo
ENSMGAG00000007915
N
0.800
HNRNPA0
Gallus gallus
ENSGALG00000006160
N
0.800
Hnrnpa0
Mus musculus
ENSMUSG00000007836
N
0.793
ENSMEUG00000013675
Macropus eugenii
ENSMEUG00000013675
N
0.793
HNRNPA0
Monodelphis domestica
ENSMODG00000014720
N
0.793
LOC100399260
Callithrix jacchus
ENSCJAG00000006112
N
0.793
HNRNPA0
Oryctolagus cuniculus
ENSOCUG00000005703
N
0.786
HNRNPA0
Sus scrofa
ENSSSCG00000014322
N
0.786
Ame_R010989
Ailuropoda melanoleuca
Ame_R010989
N
0.786
HNRNPA0
Tursiops truncatus
ENSTTRG00000000499
N
0.786
HNRNPA0
Pan troglodytes
ENSPTRG00000017273
N
0.786
ENSPPYG00000015814
Pongo pygmaeus
ENSPPYG00000015814
N
0.786
HNRNPA0
Macaca mulatta
ENSMMUG00000011929
N
0.786
HNRNPA0
Cavia porcellus
ENSCPOG00000026092
N
0.786
HNRNPA0
Homo sapiens
ENSG00000177733
N
0.786
HNRNPA0
Canis familiaris
ENSCAFG00000001132
N
0.786
HNRNPA0
Gorilla gorilla
ENSGGOG00000023303
N
0.786
A1L532_BOVIN
Bos taurus
ENSBTAG00000016929
N
0.786
HNRNPA0
Loxodonta africana
ENSLAFG00000028290
N
0.786
Hnrnpa0
Rattus norvegicus
ENSRNOG00000039876
N
0.764
HNRNPA0
Ornithorhynchus anatinus
ENSOANG00000012169
N
0.757
HNRNPA0
Taeniopygia guttata
ENSTGUG00000001186
N
0.743
ENSDARG00000029260
Danio rerio
ENSDARG00000029260
N
0.714
hnrnpa0l
Danio rerio
ENSDARG00000036161
N
0.714
hnrnpa0
Danio rerio
ENSDARG00000036162
N
0.707
HNRNPA0
Gasterosteus aculeatus
ENSGACG00000016447
N
0.700
HNRNPA0
Oryzias latipes
ENSORLG00000000221
N
0.700