CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABPC1L2B
(
Gorilla gorilla
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSGGOG00000024868
T37923_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGGOP00000026464
RRM
4
74
LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVR
ENSGGOP00000026464
RRM
92
160
VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNGMFLNYRKIF
Links
Other
RRM
family RBPs
Other
Gorilla gorilla
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSPPYG00000020468
Pongo pygmaeus
ENSPPYG00000020468
N
1.000
ENSMMUG00000009740
Macaca mulatta
ENSMMUG00000009740
N
1.000
PABPC1L2B
Homo sapiens
ENSG00000184388
N
1.000
PABPC1L2A
Gorilla gorilla
ENSGGOG00000009169
N
1.000
PABPC1L2A
Homo sapiens
ENSG00000186288
N
1.000
ENSTTRG00000013181
Tursiops truncatus
ENSTTRG00000013181
N
0.993
Ame_R020689
Ailuropoda melanoleuca
Ame_R020689
N
0.993
ENSCPOG00000009525
Cavia porcellus
ENSCPOG00000009525
N
0.993
ENSSSCG00000012413
Sus scrofa
ENSSSCG00000012413
N
0.993
ENSSTOG00000010638
Spermophilus tridecemlineatus
ENSSTOG00000010638
N
0.993
ENSOCUG00000002565
Oryctolagus cuniculus
ENSOCUG00000002565
N
0.993
ENSMICG00000006481
Microcebus murinus
ENSMICG00000006481
N
0.993
LOC100146775
Equus caballus
ENSECAG00000002620
N
0.986
ENSPCAG00000005308
Procavia capensis
ENSPCAG00000005308
N
0.986
ENSDNOG00000011788
Dasypus novemcinctus
ENSDNOG00000011788
N
0.986
ENSLAFG00000023096
Loxodonta africana
ENSLAFG00000023096
N
0.979
ENSMLUG00000003619
Myotis lucifugus
ENSMLUG00000003619
N
0.979
ENSPVAG00000016117
Pteropus vampyrus
ENSPVAG00000016117
N
0.979
ENSDORG00000011362
Dipodomys ordii
ENSDORG00000011362
N
0.979
Pabpc1l2b
Rattus norvegicus
ENSRNOG00000022267
N
0.950
ENSEEUG00000008203
Erinaceus europaeus
ENSEEUG00000008203
N
0.936
ENSXETG00000027221
Xenopus tropicalis
ENSXETG00000027221
N
0.786