CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSLAFG00000023096
(
Loxodonta africana
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSLAFG00000023096
T38103_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000016674
RRM
4
74
LYVGDLHPEVTEAMLYEKFSPAGRILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVR
ENSLAFP00000016674
RRM
92
160
VFIKNLGKTIDNKALYNIFSTFGNILSCKVACDEKGPKGYGFVHFQEQESAERAIDVMNGMFLNYRKIF
Links
Other
RRM
family RBPs
Other
Loxodonta africana
RBPs
22 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPC1L2A
Homo sapiens
ENSG00000186288
N
0.979
PABPC1L2B
Homo sapiens
ENSG00000184388
N
0.979
ENSPPYG00000020468
Pongo pygmaeus
ENSPPYG00000020468
N
0.979
ENSPCAG00000005308
Procavia capensis
ENSPCAG00000005308
N
0.979
PABPC1L2B
Gorilla gorilla
ENSGGOG00000024868
N
0.979
ENSMMUG00000009740
Macaca mulatta
ENSMMUG00000009740
N
0.979
PABPC1L2A
Gorilla gorilla
ENSGGOG00000009169
N
0.979
Ame_R020689
Ailuropoda melanoleuca
Ame_R020689
N
0.971
ENSCPOG00000009525
Cavia porcellus
ENSCPOG00000009525
N
0.971
ENSMICG00000006481
Microcebus murinus
ENSMICG00000006481
N
0.971
ENSTTRG00000013181
Tursiops truncatus
ENSTTRG00000013181
N
0.971
ENSSSCG00000012413
Sus scrofa
ENSSSCG00000012413
N
0.971
ENSSTOG00000010638
Spermophilus tridecemlineatus
ENSSTOG00000010638
N
0.971
ENSOCUG00000002565
Oryctolagus cuniculus
ENSOCUG00000002565
N
0.971
LOC100146775
Equus caballus
ENSECAG00000002620
N
0.964
ENSDNOG00000011788
Dasypus novemcinctus
ENSDNOG00000011788
N
0.964
ENSDORG00000011362
Dipodomys ordii
ENSDORG00000011362
N
0.957
ENSMLUG00000003619
Myotis lucifugus
ENSMLUG00000003619
N
0.957
ENSPVAG00000016117
Pteropus vampyrus
ENSPVAG00000016117
N
0.957
Pabpc1l2b
Rattus norvegicus
ENSRNOG00000022267
N
0.929
ENSEEUG00000008203
Erinaceus europaeus
ENSEEUG00000008203
N
0.929
ENSXETG00000027221
Xenopus tropicalis
ENSXETG00000027221
N
0.771