CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPEB4
(
Microcebus murinus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMICG00000002628
T38477_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMICP00000002399
RRM
474
487
VFVGGLPPDIDEXX
ENSMICP00000002399
RRM
582
651
IFVGGVPRPLRAVELAMIMDRLYGGVCYAGIDTDPELKYPKGAGRVAFSNQQSYIAAISARFVQLQHGEI
Links
Other
RRM
family RBPs
Other
Microcebus murinus
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cpeb3
Dipodomys ordii
ENSDORG00000005647
N
0.800
CPEB4
Tetraodon nigroviridis
ENSTNIG00000018221
I
0.774
CPEB3
Vicugna pacos
ENSVPAG00000002144
I
0.748
CPEB3
Myotis lucifugus
ENSMLUG00000009474
I
0.748
Sjc_0029950
Schistosoma japonicum
Sjc_0029950
I
0.725