CPEB4 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000018221 T42173_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
CPEB4
M149_0.6 		Homo sapiens UUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00158 		0.737
CPEB2
M012_0.6 		Homo sapiens CHUUUUU RNAcompete
Ray et al.(2013)
RNCMPT00012 		0.701
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000021387 RRM 480 515
ENSTNIP00000021387 RRM 588 657

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CPEB3 Myotis lucifugus ENSMLUG00000009474 I 0.944
CPEB3 Vicugna pacos ENSVPAG00000002144 I 0.944
CPEB3 Otolemur garnettii ENSOGAG00000002002 I 0.881
CPEB3 Tarsius syrichta ENSTSYG00000003928 I 0.864
Sjc_0029950 Schistosoma japonicum Sjc_0029950 I 0.864
CPEB2 Dasypus novemcinctus ENSDNOG00000016610 N 0.780
CPEB4 Microcebus murinus ENSMICG00000002628 N 0.774
CPEB4 Oryzias latipes ENSORLG00000007328 I 0.772
CPEB4 Oryzias latipes ENSORLG00000001711 I 0.772
CPEB4 Gasterosteus aculeatus ENSGACG00000020430 I 0.772
CPEB4 Takifugu rubripes ENSTRUG00000010692 I 0.772
CPEB4 Gasterosteus aculeatus ENSGACG00000018422 I 0.772
CPEB4 Danio rerio ENSDARG00000060495 I 0.772
CPEB4 Takifugu rubripes ENSTRUG00000010947 I 0.765
CPEB4 Tetraodon nigroviridis ENSTNIG00000017077 I 0.765
CPEB4 Loxodonta africana ENSLAFG00000016030 I 0.757
CPEB4 Homo sapiens ENSG00000113742 D 0.757
CPEB4 Cavia porcellus ENSCPOG00000015530 I 0.757
LOC100058918 Equus caballus ENSECAG00000016921 I 0.757
CPEB4 Erinaceus europaeus ENSEEUG00000010887 I 0.757
CPEB4 Myotis lucifugus ENSMLUG00000014640 I 0.757
CPEB4 Otolemur garnettii ENSOGAG00000004243 I 0.757
CPEB4 Pteropus vampyrus ENSPVAG00000007863 I 0.757
CPEB4 Pan troglodytes ENSPTRG00000017545 I 0.757
Cpeb4 Rattus norvegicus ENSRNOG00000033169 I 0.757
CPEB4 Tupaia belangeri ENSTBEG00000001429 I 0.757
CPEB4 Taeniopygia guttata ENSTGUG00000000329 I 0.757
ENSPPYG00000016058 Pongo pygmaeus ENSPPYG00000016058 I 0.757
CPEB4 Procavia capensis ENSPCAG00000007021 I 0.757
Cpeb4 Mus musculus ENSMUSG00000020300 I 0.757
CPEB4 Oryctolagus cuniculus ENSOCUG00000008971 I 0.757
CPEB4 Callithrix jacchus ENSCJAG00000019166 I 0.757
CPEB4 Ochotona princeps ENSOPRG00000002868 I 0.757
CPEB4 Monodelphis domestica ENSMODG00000006036 I 0.757
CPEB4 Gorilla gorilla ENSGGOG00000010097 I 0.757
CPEB4 Anolis carolinensis ENSACAG00000015039 I 0.757
A7Z087_BOVIN Bos taurus ENSBTAG00000009995 I 0.757
ADH10187 Xenopus laevis ADH10187 I 0.757
Ame_R004815 Ailuropoda melanoleuca Ame_R004815 I 0.757
CPEB4 Tarsius syrichta ENSTSYG00000003136 I 0.757
CPEB4 Spermophilus tridecemlineatus ENSSTOG00000006077 I 0.752
CPEB4 Canis familiaris ENSCAFG00000016761 I 0.752
CPEB4 Macaca mulatta ENSMMUG00000019926 I 0.750
CPEB4 Ornithorhynchus anatinus ENSOANG00000003990 I 0.746
CPEB4 Gallus gallus ENSGALG00000014074 I 0.746
CPEB4 Meleagris gallopavo ENSMGAG00000003660 I 0.746
CPEB4 Sorex araneus ENSSARG00000013389 I 0.743
CPEB3 Microcebus murinus ENSMICG00000017842 I 0.737
CPEB3 Anolis carolinensis ENSACAG00000006335 I 0.737
Cpeb3 Rattus norvegicus ENSRNOG00000020689 I 0.737
CPEB3 Echinops telfairi ENSETEG00000000111 I 0.737
CPEB3 Macropus eugenii ENSMEUG00000009948 I 0.737
cpeb3 Xenopus tropicalis ENSXETG00000012190 I 0.737
CPEB3 Macaca mulatta ENSMMUG00000015050 I 0.737
Ame_R003954 Ailuropoda melanoleuca Ame_R003954 I 0.737
CPEB3 Oryctolagus cuniculus ENSOCUG00000010454 I 0.737
ENSPPYG00000002481 Pongo pygmaeus ENSPPYG00000002481 I 0.737
Cpeb3 Mus musculus ENSMUSG00000039652 I 0.737
CPEB3 Pan troglodytes ENSPTRG00000002753 I 0.737
CPEB3 Monodelphis domestica ENSMODG00000006673 I 0.737
CPEB3 Loxodonta africana ENSLAFG00000018716 I 0.737
CPEB3 Meleagris gallopavo ENSMGAG00000009148 I 0.737
CPEB3 Bos taurus ENSBTAG00000015450 I 0.737
CPEB3 Homo sapiens ENSG00000107864 I 0.737
CPEB3 Tupaia belangeri ENSTBEG00000013125 I 0.737
CPEB3 Canis familiaris ENSCAFG00000007423 I 0.737
CPEB3 Taeniopygia guttata ENSTGUG00000008988 I 0.737
LOC100392612 Callithrix jacchus ENSCJAG00000008495 I 0.737
CPEB3 Gallus gallus ENSGALG00000006912 I 0.737
CPEB3 Gorilla gorilla ENSGGOG00000016441 I 0.737
CPEB3 Sus scrofa ENSSSCG00000010468 I 0.737
cpeb3 Danio rerio ENSDARG00000060103 I 0.732
CPEB3 Sorex araneus ENSSARG00000001994 I 0.732
CPEB3 Ornithorhynchus anatinus ENSOANG00000015723 I 0.732
CPEB3 Choloepus hoffmanni ENSCHOG00000000272 I 0.732
CPEB3 Tetraodon nigroviridis ENSTNIG00000004021 I 0.732
CPEB3 Equus caballus ENSECAG00000000077 I 0.732
CPEB3 Takifugu rubripes ENSTRUG00000011309 I 0.732
CPEB3 Gasterosteus aculeatus ENSGACG00000002944 I 0.730
CPEB3 Oryzias latipes ENSORLG00000000726 I 0.730
e_gw1.21.3.1 Lottia gigantea e_gw1.21.3.1 I 0.727
Ame_R004097 Ailuropoda melanoleuca Ame_R004097 I 0.715
XR_025355.1 Pan troglodytes ENSPTRG00000015924 I 0.715
CPEB2 Sus scrofa ENSSSCG00000008736 I 0.715
CPEB2 Tursiops truncatus ENSTTRG00000003940 I 0.715
CPEB2 Taeniopygia guttata ENSTGUG00000009822 I 0.715
CPEB2 Cavia porcellus ENSCPOG00000001180 I 0.715
ENSPPYG00000014613 Pongo pygmaeus ENSPPYG00000014613 I 0.715
gw.572.2.1 Branchiostoma floridae gw.572.2.1 I 0.715
CPEB2 Choloepus hoffmanni ENSCHOG00000003058 I 0.715
CPEB2 Loxodonta africana ENSLAFG00000007142 I 0.715
CPEB2 Macropus eugenii ENSMEUG00000008074 I 0.715
CPEB2 Meleagris gallopavo ENSMGAG00000005200 I 0.715
ENSACAG00000012015 Anolis carolinensis ENSACAG00000012015 I 0.715
Cpeb2 Dipodomys ordii ENSDORG00000015311 I 0.715
CPEB2 Gorilla gorilla ENSGGOG00000004449 I 0.715
CPEB2 Canis familiaris ENSCAFG00000015372 I 0.715
CPEB2 Homo sapiens ENSG00000137449 D 0.715
CPEB2 Bos taurus ENSBTAG00000019847 I 0.715
CPEB2 Gallus gallus ENSGALG00000014516 I 0.715
CPEB2 Otolemur garnettii ENSOGAG00000011237 I 0.715
nasonia_NCBI_hmm338954 Nasonia vitripennis nasonia_NCBI_hmm338954 I 0.715
Cpeb2 Mus musculus ENSMUSG00000039782 I 0.715
CPEB2 Macaca mulatta ENSMMUG00000001384 I 0.715
CPEB2 Oryctolagus cuniculus ENSOCUG00000007950 I 0.715
CPEB2 Equus caballus ENSECAG00000008722 I 0.715
CPEB2 Ornithorhynchus anatinus ENSOANG00000003552 I 0.715
LOC100402805 Callithrix jacchus ENSCJAG00000012227 I 0.715
CPEB2 Monodelphis domestica ENSMODG00000001149 I 0.715
XP_002159261.1 Hydra magnipapillata XP_002159261.1 I 0.713
CPEB2 Tetraodon nigroviridis ENSTNIG00000017678 I 0.708
CPEB2 Takifugu rubripes ENSTRUG00000013956 I 0.708
CPEB2 Gasterosteus aculeatus ENSGACG00000013966 I 0.708
fgenesh2_pg.scaffold_143000050 Branchiostoma floridae fgenesh2_pg.scaffold_143000050 I 0.708
CPEB2 Oryzias latipes ENSORLG00000016222 I 0.708
DGIL_AUG5s10609g1t1 Acyrtosiphon pisum DGIL_AUG5s10609g1t1 I 0.706
XP_789277.1 Strongylocentrotus purpuratus XP_789277.1 I 0.703
XP_001187928.1 Strongylocentrotus purpuratus XP_001187928.1 I 0.703