CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_001373740.1
(
Monodelphis domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSMODG00000002463
T39053_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMODP00000002993
RRM
8
77
LFVGGLSPYTTEIRLRSYFEAFGCLRDCVVVMNAQTNRSRCFGFITFSSLSEADAAMAASPHEVDGSRVE
ENSMODP00000002993
RRM
99
168
IFVGGIKGDVSESDLVRHFSQFGPVEKAEIIVNKQSGKKRGFGFVHFFDHDTADKAAVIKFHPIQGHRVE
Links
Other
RRM
family RBPs
Other
Monodelphis domestica
RBPs
23 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSMEUG00000008352
Macropus eugenii
ENSMEUG00000008352
N
0.771
HNRNPA0
Monodelphis domestica
ENSMODG00000014720
N
0.750
HNRNPA0
Gallus gallus
ENSGALG00000006160
N
0.750
ENSMEUG00000013675
Macropus eugenii
ENSMEUG00000013675
N
0.750
HNRNPA0
Meleagris gallopavo
ENSMGAG00000007915
N
0.750
HNRNPA0
Canis familiaris
ENSCAFG00000001132
N
0.743
HNRNPA0
Cavia porcellus
ENSCPOG00000026092
N
0.743
HNRNPA0
Homo sapiens
ENSG00000177733
N
0.743
HNRNPA0
Loxodonta africana
ENSLAFG00000028290
N
0.743
HNRNPA0
Macaca mulatta
ENSMMUG00000011929
N
0.743
HNRNPA0
Gorilla gorilla
ENSGGOG00000023303
N
0.743
A1L532_BOVIN
Bos taurus
ENSBTAG00000016929
N
0.743
HNRNPA0
Pan troglodytes
ENSPTRG00000017273
N
0.743
ENSPPYG00000015814
Pongo pygmaeus
ENSPPYG00000015814
N
0.743
HNRNPA0
Oryctolagus cuniculus
ENSOCUG00000005703
N
0.743
Ame_R010989
Ailuropoda melanoleuca
Ame_R010989
N
0.743
HNRNPA0
Sus scrofa
ENSSSCG00000014322
N
0.743
HNRNPA0
Tursiops truncatus
ENSTTRG00000000499
N
0.743
Hnrnpa0
Mus musculus
ENSMUSG00000007836
N
0.743
LOC100399260
Callithrix jacchus
ENSCJAG00000006112
N
0.736
HNRNPA0
Ornithorhynchus anatinus
ENSOANG00000012169
N
0.714
Hnrnpa0
Rattus norvegicus
ENSRNOG00000039876
N
0.714
HNRNPA0
Taeniopygia guttata
ENSTGUG00000001186
N
0.700