CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Hnrnpa0
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000039876
T41236_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000057942
RRM
9
78
VLIGEXNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVE
ENSRNOP00000057942
RRM
100
169
LFVGGLKGDVAEGDLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQGHRVE
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
27 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Hnrnpa0
Mus musculus
ENSMUSG00000007836
N
0.971
HNRNPA0
Cavia porcellus
ENSCPOG00000026092
N
0.964
ENSMEUG00000013675
Macropus eugenii
ENSMEUG00000013675
N
0.964
HNRNPA0
Oryctolagus cuniculus
ENSOCUG00000005703
N
0.964
HNRNPA0
Loxodonta africana
ENSLAFG00000028290
N
0.957
HNRNPA0
Sus scrofa
ENSSSCG00000014322
N
0.957
HNRNPA0
Gorilla gorilla
ENSGGOG00000023303
N
0.957
HNRNPA0
Monodelphis domestica
ENSMODG00000014720
N
0.957
HNRNPA0
Pan troglodytes
ENSPTRG00000017273
N
0.957
ENSPPYG00000015814
Pongo pygmaeus
ENSPPYG00000015814
N
0.957
HNRNPA0
Macaca mulatta
ENSMMUG00000011929
N
0.957
HNRNPA0
Homo sapiens
ENSG00000177733
N
0.957
HNRNPA0
Tursiops truncatus
ENSTTRG00000000499
N
0.957
Ame_R010989
Ailuropoda melanoleuca
Ame_R010989
N
0.957
A1L532_BOVIN
Bos taurus
ENSBTAG00000016929
N
0.957
HNRNPA0
Canis familiaris
ENSCAFG00000001132
N
0.957
LOC100399260
Callithrix jacchus
ENSCJAG00000006112
N
0.950
HNRNPA0
Ornithorhynchus anatinus
ENSOANG00000012169
N
0.921
HNRNPA0
Gallus gallus
ENSGALG00000006160
N
0.879
HNRNPA0
Meleagris gallopavo
ENSMGAG00000007915
N
0.879
HNRNPA0
Taeniopygia guttata
ENSTGUG00000001186
N
0.836
hnrnpa0
Xenopus tropicalis
ENSXETG00000003833
N
0.786
AAH45023
Xenopus laevis
AAH45023
N
0.771
AAH71067
Xenopus laevis
AAH71067
N
0.764
AAH41277
Xenopus laevis
AAH41277
N
0.764
AAI06306
Xenopus laevis
AAI06306
N
0.764
XM_001373740.1
Monodelphis domestica
ENSMODG00000002463
N
0.714