CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SCAF8
(
Procavia capensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPCAG00000013044
T40393_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000012256
RRM
478
544
LWVGQVDKKATQQDLTNLFEEFGQIESINXXXPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIK
Links
Other
RRM
family RBPs
Other
Procavia capensis
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SCAF8
Gorilla gorilla
ENSGGOG00000008645
N
0.941
Ame_R017029
Ailuropoda melanoleuca
Ame_R017029
N
0.941
SCAF8
Loxodonta africana
ENSLAFG00000000022
N
0.941
SCAF8
Homo sapiens
ENSG00000213079
N
0.941
Q6JDJ9_CANFA
Canis familiaris
ENSCAFG00000000570
N
0.941
ENSCPOG00000022216
Cavia porcellus
ENSCPOG00000022216
N
0.941
ENSPPYG00000017121
Pongo pygmaeus
ENSPPYG00000017121
N
0.941
SCAF8
Vicugna pacos
ENSVPAG00000012465
N
0.941
SCAF8
Macaca mulatta
ENSMMUG00000015163
N
0.941
SCAF8
Pteropus vampyrus
ENSPVAG00000005582
N
0.941
SCAF8
Pan troglodytes
ENSPTRG00000018727
N
0.941
SCAF8
Ochotona princeps
ENSOPRG00000018413
N
0.941
SCAF8
Sus scrofa
ENSSSCG00000004070
N
0.941
LOC100061852
Equus caballus
ENSECAG00000005540
N
0.941
SCAF8
Oryctolagus cuniculus
ENSOCUG00000026063
N
0.941
Scaf8
Mus musculus
ENSMUSG00000046201
N
0.926
LOC100390484
Callithrix jacchus
ENSCJAG00000012631
N
0.926
Rbm16
Rattus norvegicus
ENSRNOG00000016919
N
0.926
RBM16
Taeniopygia guttata
ENSTGUG00000011151
N
0.912
SCAF8
Monodelphis domestica
ENSMODG00000008301
N
0.912
SCAF8
Meleagris gallopavo
ENSMGAG00000012762
N
0.912
SCAF8
Anolis carolinensis
ENSACAG00000005282
N
0.912
RBM16
Gallus gallus
ENSGALG00000013635
N
0.912
SCAF8
Danio rerio
ENSDARG00000074786
N
0.897
SCAF8
Tetraodon nigroviridis
ENSTNIG00000016885
N
0.868
SCAF8
Takifugu rubripes
ENSTRUG00000009243
N
0.868
SCAF8
Gasterosteus aculeatus
ENSGACG00000006909
N
0.853
AAH89292
Xenopus laevis
AAH89292
N
0.824
rbm16
Xenopus tropicalis
ENSXETG00000013132
N
0.824
SCAF8
Oryzias latipes
ENSORLG00000017358
N
0.809