CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LOC100390484
(
Callithrix jacchus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSCJAG00000012631
T35590_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCJAP00000023255
RRM
479
545
LWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKIIK
ENSCJAP00000023275
RRM
545
611
LWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKIIK
ENSCJAP00000023288
RRM
479
545
LWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKIIK
ENSCJAP00000051002
RRM
8
76
LWVGQVDKKATQQDLTNLFEEFGQIESINAIMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKIIK
Links
Other
RRM
family RBPs
Other
Callithrix jacchus
RBPs
62 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SCAF8
Macaca mulatta
ENSMMUG00000015163
N
0.985
SCAF8
Pteropus vampyrus
ENSPVAG00000005582
N
0.985
SCAF8
Vicugna pacos
ENSVPAG00000012465
N
0.985
SCAF8
Gorilla gorilla
ENSGGOG00000008645
N
0.985
SCAF8
Loxodonta africana
ENSLAFG00000000022
N
0.985
RBM16
Taeniopygia guttata
ENSTGUG00000011151
N
0.985
SCAF8
Oryctolagus cuniculus
ENSOCUG00000026063
N
0.985
SCAF8
Pan troglodytes
ENSPTRG00000018727
N
0.985
ENSPPYG00000017121
Pongo pygmaeus
ENSPPYG00000017121
N
0.985
SCAF8
Sus scrofa
ENSSSCG00000004070
N
0.985
SCAF8
Ochotona princeps
ENSOPRG00000018413
N
0.985
Ame_R017029
Ailuropoda melanoleuca
Ame_R017029
N
0.985
SCAF8
Meleagris gallopavo
ENSMGAG00000012762
N
0.985
RBM16
Gallus gallus
ENSGALG00000013635
N
0.985
Q6JDJ9_CANFA
Canis familiaris
ENSCAFG00000000570
N
0.985
LOC100061852
Equus caballus
ENSECAG00000005540
N
0.985
ENSCPOG00000022216
Cavia porcellus
ENSCPOG00000022216
N
0.985
SCAF8
Anolis carolinensis
ENSACAG00000005282
N
0.985
SCAF8
Homo sapiens
ENSG00000213079
N
0.985
Scaf8
Mus musculus
ENSMUSG00000046201
N
0.970
Rbm16
Rattus norvegicus
ENSRNOG00000016919
N
0.970
SCAF8
Monodelphis domestica
ENSMODG00000008301
N
0.955
SCAF8
Danio rerio
ENSDARG00000074786
N
0.940
SCAF8
Procavia capensis
ENSPCAG00000013044
N
0.926
SCAF8
Gasterosteus aculeatus
ENSGACG00000006909
N
0.925
SCAF8
Tetraodon nigroviridis
ENSTNIG00000016885
N
0.910
SCAF8
Takifugu rubripes
ENSTRUG00000009243
N
0.910
SCAF8
Oryzias latipes
ENSORLG00000017358
N
0.881
rbm16
Xenopus tropicalis
ENSXETG00000013132
N
0.881
AAH89292
Xenopus laevis
AAH89292
N
0.881
SFR15_RAT
Rattus norvegicus
ENSRNOG00000002104
N
0.746
LOC100392289
Callithrix jacchus
ENSCJAG00000008993
N
0.746
SFRS15
Bos taurus
ENSBTAG00000018855
N
0.746
Ame_R017528
Ailuropoda melanoleuca
Ame_R017528
N
0.746
SCAF4
Tursiops truncatus
ENSTTRG00000010963
N
0.746
SCAF4
Tarsius syrichta
ENSTSYG00000011344
N
0.746
SCAF4
Spermophilus tridecemlineatus
ENSSTOG00000004450
N
0.746
SCAF4
Canis familiaris
ENSCAFG00000008863
N
0.746
SCAF4
Ochotona princeps
ENSOPRG00000007016
N
0.746
SCAF4
Homo sapiens
ENSG00000156304
N
0.746
SCAF4
Gorilla gorilla
ENSGGOG00000015557
N
0.746
SCAF4
Loxodonta africana
ENSLAFG00000010710
N
0.746
SCAF4
Felis catus
ENSFCAG00000002228
N
0.746
SCAF4
Erinaceus europaeus
ENSEEUG00000015913
N
0.746
SCAF4
Cavia porcellus
ENSCPOG00000012443
N
0.746
Scaf4
Dipodomys ordii
ENSDORG00000013851
N
0.746
SFRS15
Equus caballus
ENSECAG00000014248
N
0.746
SCAF4
Pteropus vampyrus
ENSPVAG00000005220
N
0.746
SCAF4
Myotis lucifugus
ENSMLUG00000011472
N
0.746
SCAF4
Oryctolagus cuniculus
ENSOCUG00000008336
N
0.746
SCAF4
Procavia capensis
ENSPCAG00000009998
N
0.746
ENSPPYG00000011355
Pongo pygmaeus
ENSPPYG00000011355
N
0.746
XR_025194.1
Pan troglodytes
ENSPTRG00000013848
N
0.746
SCAF4
Macaca mulatta
ENSMMUG00000001712
N
0.746
Scaf4
Mus musculus
ENSMUSG00000022983
N
0.746
SCAF4
Monodelphis domestica
ENSMODG00000021040
N
0.746
SCAF4
Meleagris gallopavo
ENSMGAG00000014515
N
0.731
SCAF4
Sorex araneus
ENSSARG00000009994
N
0.731
SFRS15
Taeniopygia guttata
ENSTGUG00000013464
N
0.731
SCAF4
Echinops telfairi
ENSETEG00000000583
N
0.731
Q5F447_CHICK
Gallus gallus
ENSGALG00000015850
N
0.731