CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM11
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000013759
T41651_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000012330
RRM
12
81
VFVGNLEPRVREEILYELFLQAGPLTKVTICKDREGKPKSLGFVCFKLPESVSLAIALQNGIRLYGRPIV
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM11
Loxodonta africana
ENSLAFG00000007082
N
0.914
RBM11
Gorilla gorilla
ENSGGOG00000025603
N
0.914
RBM11
Felis catus
ENSFCAG00000018199
N
0.914
Rbm11
Dipodomys ordii
ENSDORG00000000801
N
0.914
RBM11
Myotis lucifugus
ENSMLUG00000005721
N
0.914
RBM11
Macaca mulatta
ENSMMUG00000020089
N
0.914
RBM11
Pan troglodytes
ENSPTRG00000013786
N
0.914
ENSPPYG00000011285
Pongo pygmaeus
ENSPPYG00000011285
N
0.914
RBM11
Procavia capensis
ENSPCAG00000008368
N
0.914
RBM11
Oryctolagus cuniculus
ENSOCUG00000010409
N
0.914
RBM11
Callithrix jacchus
ENSCJAG00000003218
N
0.914
RBM11
Homo sapiens
ENSG00000185272
N
0.914
RBM11
Tursiops truncatus
ENSTTRG00000007410
N
0.914
Q3SZP6_BOVIN
Bos taurus
ENSBTAG00000034467
N
0.914
Q3SZP6_BOVIN
Bos taurus
ENSBTAG00000034347
N
0.914
RBM11
Choloepus hoffmanni
ENSCHOG00000007826
N
0.900
RBM11
Canis familiaris
ENSCAFG00000008013
N
0.900
RBM11
Tarsius syrichta
ENSTSYG00000003871
N
0.900
RBM11
Sorex araneus
ENSSARG00000001717
N
0.900
Ame_R002220
Ailuropoda melanoleuca
Ame_R002220
N
0.900
RBM11
Sus scrofa
ENSSSCG00000012005
N
0.886
D3ZQ24_RAT
Rattus norvegicus
ENSRNOG00000029147
N
0.886
Rbm11
Mus musculus
ENSMUSG00000032940
N
0.886
RBM11
Otolemur garnettii
ENSOGAG00000005760
N
0.871
RBM11
Ornithorhynchus anatinus
ENSOANG00000008231
N
0.871
RBM11
Macropus eugenii
ENSMEUG00000003535
N
0.857
ENSACAG00000000494
Anolis carolinensis
ENSACAG00000000494
N
0.786
rbm11
Xenopus tropicalis
ENSXETG00000005847
N
0.743
AAH68729
Xenopus laevis
AAH68729
N
0.729
RBM11
Vicugna pacos
ENSVPAG00000000673
N
0.700