CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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AAH68729
(
Xenopus laevis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
AAH68729
T59502_0.6
Xenbase (2010-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAH68729
RRM
12
81
LFVGNLDCSVNEEILYELFLQAGPLTKVTVAKDKEGNSKAFGFVCFKHSESVPYAKALLNGIRLYGRPIK
Links
Other
RRM
family RBPs
Other
Xenopus laevis
RBPs
30 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
rbm11
Xenopus tropicalis
ENSXETG00000005847
N
0.986
AAH74235
Xenopus laevis
AAH74235
N
0.914
ENSACAG00000000494
Anolis carolinensis
ENSACAG00000000494
N
0.843
RBM11
Procavia capensis
ENSPCAG00000008368
N
0.786
RBM11
Oryctolagus cuniculus
ENSOCUG00000010409
N
0.786
ENSPPYG00000011285
Pongo pygmaeus
ENSPPYG00000011285
N
0.786
RBM11
Ornithorhynchus anatinus
ENSOANG00000008231
N
0.786
RBM11
Sus scrofa
ENSSSCG00000012005
N
0.786
Ame_R002220
Ailuropoda melanoleuca
Ame_R002220
N
0.786
RBM11
Tursiops truncatus
ENSTTRG00000007410
N
0.786
RBM11
Myotis lucifugus
ENSMLUG00000005721
N
0.786
RBM11
Pan troglodytes
ENSPTRG00000013786
N
0.786
RBM11
Macaca mulatta
ENSMMUG00000020089
N
0.786
RBM11
Choloepus hoffmanni
ENSCHOG00000007826
N
0.786
RBM11
Macropus eugenii
ENSMEUG00000003535
N
0.786
RBM11
Canis familiaris
ENSCAFG00000008013
N
0.786
Q3SZP6_BOVIN
Bos taurus
ENSBTAG00000034467
N
0.786
Q3SZP6_BOVIN
Bos taurus
ENSBTAG00000034347
N
0.786
Rbm11
Dipodomys ordii
ENSDORG00000000801
N
0.786
RBM11
Callithrix jacchus
ENSCJAG00000003218
N
0.786
RBM11
Gorilla gorilla
ENSGGOG00000025603
N
0.786
RBM11
Loxodonta africana
ENSLAFG00000007082
N
0.786
RBM11
Felis catus
ENSFCAG00000018199
N
0.786
RBM11
Homo sapiens
ENSG00000185272
N
0.786
Rbm11
Mus musculus
ENSMUSG00000032940
N
0.771
D3ZQ24_RAT
Rattus norvegicus
ENSRNOG00000029147
N
0.771
RBM11
Tarsius syrichta
ENSTSYG00000003871
N
0.771
RBM11
Sorex araneus
ENSSARG00000001717
N
0.771
RBM11
Otolemur garnettii
ENSOGAG00000005760
N
0.757
RBM11
Spermophilus tridecemlineatus
ENSSTOG00000013759
N
0.729