CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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U2SURP
(
Spermophilus tridecemlineatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSSTOG00000015997
T41673_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSSTOP00000014318
RRM
275
345
LYLGNINPQMNEEMLCQEFGRFGPLASVKIMWPRTDEERARERNCGFVAFMNRRDAERALKNLNGKXXXXX
Links
Other
RRM
family RBPs
Other
Spermophilus tridecemlineatus
RBPs
44 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC424773
Gallus gallus
ENSGALG00000002612
N
0.853
U2SURP
Gorilla gorilla
ENSGGOG00000005563
N
0.853
U2SURP
Loxodonta africana
ENSLAFG00000002566
N
0.853
U2SURP
Tupaia belangeri
ENSTBEG00000016313
N
0.853
U2SURP
Homo sapiens
ENSG00000163714
N
0.853
U2SURP
Erinaceus europaeus
ENSEEUG00000013553
N
0.853
U2SURP
Echinops telfairi
ENSETEG00000000149
N
0.853
U2SURP
Macropus eugenii
ENSMEUG00000000127
N
0.853
U2SURP
Meleagris gallopavo
ENSMGAG00000006549
N
0.853
XM_001372164.1
Monodelphis domestica
ENSMODG00000021242
N
0.853
2610101N10Rik
Mus musculus
ENSMUSG00000032407
N
0.853
U2SURP
Ornithorhynchus anatinus
ENSOANG00000003644
N
0.853
U2SURP
Procavia capensis
ENSPCAG00000015251
N
0.853
U2SURP
Macaca mulatta
ENSMMUG00000002775
N
0.853
ENSPPYG00000014178
Pongo pygmaeus
ENSPPYG00000014178
N
0.853
U2SURP
Myotis lucifugus
ENSMLUG00000002920
N
0.853
LOC100051188
Equus caballus
ENSECAG00000022460
N
0.853
U2SURP
Dasypus novemcinctus
ENSDNOG00000006427
N
0.853
U2SURP
Vicugna pacos
ENSVPAG00000004697
N
0.853
sr140
Xenopus tropicalis
ENSXETG00000022133
N
0.853
U2SURP
Pteropus vampyrus
ENSPVAG00000016077
N
0.853
U2SURP
Tursiops truncatus
ENSTTRG00000017170
N
0.853
RGD1307882
Rattus norvegicus
ENSRNOG00000008607
N
0.853
U2SURP
Taeniopygia guttata
ENSTGUG00000008687
N
0.853
U2SURP
Sus scrofa
ENSSSCG00000011684
N
0.853
Ame_R004744
Ailuropoda melanoleuca
Ame_R004744
N
0.853
U2SURP
Anolis carolinensis
ENSACAG00000009512
N
0.853
U2SURP
Cavia porcellus
ENSCPOG00000011656
N
0.853
U2SURP
Pan troglodytes
ENSPTRG00000015489
N
0.853
LOC100411013
Callithrix jacchus
ENSCJAG00000001639
N
0.853
U2SURP
Choloepus hoffmanni
ENSCHOG00000001300
N
0.853
Q148C6_BOVIN
Bos taurus
ENSBTAG00000009154
N
0.853
U2SURP
Canis familiaris
ENSCAFG00000007973
N
0.853
U2SURP
Oryctolagus cuniculus
ENSOCUG00000012121
N
0.853
U2SURP
Gasterosteus aculeatus
ENSGACG00000003763
N
0.840
U2SURP
Tetraodon nigroviridis
ENSTNIG00000012767
N
0.827
U2SURP
Oryzias latipes
ENSORLG00000010235
N
0.827
U2SURP
Takifugu rubripes
ENSTRUG00000017810
N
0.827
U2SURP
Danio rerio
ENSDARG00000061490
N
0.813
ENSMODG00000010847
Monodelphis domestica
ENSMODG00000010847
N
0.787
U2SURP
Sorex araneus
ENSSARG00000013779
N
0.733
U2SURP
Microcebus murinus
ENSMICG00000008681
N
0.733
U2SURP
Otolemur garnettii
ENSOGAG00000004335
N
0.733
estExt_fgenesh2_pm.C_3790010
Branchiostoma floridae
estExt_fgenesh2_pm.C_3790010
N
0.707