sr140 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000022133 T42943_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000047875 RRM 237 310

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

50 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
XM_001372164.1 Monodelphis domestica ENSMODG00000021242 N 0.973
2610101N10Rik Mus musculus ENSMUSG00000032407 N 0.973
U2SURP Ornithorhynchus anatinus ENSOANG00000003644 N 0.973
U2SURP Oryctolagus cuniculus ENSOCUG00000012121 N 0.973
U2SURP Macaca mulatta ENSMMUG00000002775 N 0.973
U2SURP Myotis lucifugus ENSMLUG00000002920 N 0.973
U2SURP Gorilla gorilla ENSGGOG00000005563 N 0.973
U2SURP Loxodonta africana ENSLAFG00000002566 N 0.973
U2SURP Meleagris gallopavo ENSMGAG00000006549 N 0.973
U2SURP Procavia capensis ENSPCAG00000015251 N 0.973
ENSPPYG00000014178 Pongo pygmaeus ENSPPYG00000014178 N 0.973
U2SURP Taeniopygia guttata ENSTGUG00000008687 N 0.973
U2SURP Tursiops truncatus ENSTTRG00000017170 N 0.973
U2SURP Vicugna pacos ENSVPAG00000004697 N 0.973
U2SURP Tupaia belangeri ENSTBEG00000016313 N 0.973
U2SURP Sus scrofa ENSSSCG00000011684 N 0.973
U2SURP Pan troglodytes ENSPTRG00000015489 N 0.973
U2SURP Pteropus vampyrus ENSPVAG00000016077 N 0.973
RGD1307882 Rattus norvegicus ENSRNOG00000008607 N 0.973
LOC424773 Gallus gallus ENSGALG00000002612 N 0.973
U2SURP Macropus eugenii ENSMEUG00000000127 N 0.973
U2SURP Anolis carolinensis ENSACAG00000009512 N 0.973
Ame_R004744 Ailuropoda melanoleuca Ame_R004744 N 0.973
Q148C6_BOVIN Bos taurus ENSBTAG00000009154 N 0.973
U2SURP Cavia porcellus ENSCPOG00000011656 N 0.973
U2SURP Gasterosteus aculeatus ENSGACG00000003763 N 0.973
LOC100411013 Callithrix jacchus ENSCJAG00000001639 N 0.973
U2SURP Choloepus hoffmanni ENSCHOG00000001300 N 0.973
U2SURP Dasypus novemcinctus ENSDNOG00000006427 N 0.973
U2SURP Echinops telfairi ENSETEG00000000149 N 0.973
LOC100051188 Equus caballus ENSECAG00000022460 N 0.973
U2SURP Erinaceus europaeus ENSEEUG00000013553 N 0.973
U2SURP Homo sapiens ENSG00000163714 N 0.973
U2SURP Canis familiaris ENSCAFG00000007973 N 0.960
U2SURP Takifugu rubripes ENSTRUG00000017810 N 0.959
U2SURP Tetraodon nigroviridis ENSTNIG00000012767 N 0.959
U2SURP Oryzias latipes ENSORLG00000010235 N 0.959
U2SURP Danio rerio ENSDARG00000061490 N 0.946
ENSMODG00000010847 Monodelphis domestica ENSMODG00000010847 N 0.867
U2SURP Spermophilus tridecemlineatus ENSSTOG00000015997 N 0.853
U2SURP Microcebus murinus ENSMICG00000008681 N 0.851
U2SURP Otolemur garnettii ENSOGAG00000004335 N 0.851
U2SURP Sorex araneus ENSSARG00000013779 N 0.851
XP_001179024.1 Strongylocentrotus purpuratus XP_001179024.1 N 0.747
XP_794306.2 Strongylocentrotus purpuratus XP_794306.2 N 0.747
estExt_fgenesh2_pm.C_3790010 Branchiostoma floridae estExt_fgenesh2_pm.C_3790010 N 0.747
e_gw1.11.101.1 Capitella teleta e_gw1.11.101.1 N 0.720
zgc:163098 Danio rerio ENSDARG00000078911 N 0.720
Smp_161730 Schistosoma mansoni Smp_161730 N 0.707
Sjc_0023880 Schistosoma japonicum Sjc_0023880 N 0.707