CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
raver1
(
Xenopus tropicalis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSXETG00000011622
T42876_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSXETP00000025402
RRM
67
130
ILIKGLPGDITNQEVHDLLGEYELKYCFVDKYKGTAFVTLLNGEQAESAIRRFHQTHIRDREIS
ENSXETP00000025402
RRM
140
210
LCIANLPPNYTQQQFEDLVRPFGNLERCFLVYSSTTGRPKGYGFVEYMKKDSASRAKSDLLGRQLGSRTLY
ENSXETP00000025402
RRM
233
297
QLQECDIGDLREAFSKISAPSFCQLAYGQDGQYKGFAVVEYESDTVTEMVQQQMDESSVAGSRVR
Links
Other
RRM
family RBPs
Other
Xenopus tropicalis
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AAH70699
Xenopus laevis
AAH70699
N
0.946
RAVER1
Monodelphis domestica
ENSMODG00000005584
N
0.723
RAVER1
Homo sapiens
ENSG00000161847
N
0.705
RAVER1
Pan troglodytes
ENSPTRG00000010466
N
0.705
ENSPPYG00000010514
Pongo pygmaeus
ENSPPYG00000010514
N
0.700