CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSPPYG00000010514
(
Pongo pygmaeus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPPYG00000010514
T40517_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000011780
RRM
61
124
ILIRGLPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELS
ENSPPYP00000011780
RRM
134
204
LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY
ENSPPYP00000011780
RRM
231
293
GFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQRADGLSLGGSHLR
Links
Other
RRM
family RBPs
Other
Pongo pygmaeus
RBPs
25 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER1
Pan troglodytes
ENSPTRG00000010466
N
0.990
RAVER1
Homo sapiens
ENSG00000161847
N
0.990
RAVER1
Gorilla gorilla
ENSGGOG00000006015
N
0.970
A4FUZ2_BOVIN
Bos taurus
ENSBTAG00000015721
N
0.932
RAVER1
Canis familiaris
ENSCAFG00000017861
N
0.927
Raver1
Dipodomys ordii
ENSDORG00000010106
N
0.927
RAVER1
Tursiops truncatus
ENSTTRG00000009552
N
0.927
RAVER1
Sus scrofa
ENSSSCG00000013650
N
0.927
RAVER1
Pteropus vampyrus
ENSPVAG00000003689
N
0.922
RAVER1
Microcebus murinus
ENSMICG00000010326
N
0.922
RAVER1
Macaca mulatta
ENSMMUG00000014897
N
0.920
RAVER1
Loxodonta africana
ENSLAFG00000003664
N
0.917
Raver1
Rattus norvegicus
ENSRNOG00000020710
N
0.917
RAVER1
Cavia porcellus
ENSCPOG00000001008
N
0.917
RAVER1
Felis catus
ENSFCAG00000009435
N
0.913
Raver1
Mus musculus
ENSMUSG00000010205
N
0.912
RAVER1
Spermophilus tridecemlineatus
ENSSTOG00000003241
N
0.908
RAVER1
Oryctolagus cuniculus
ENSOCUG00000020918
N
0.903
RAVER1
Equus caballus
ENSECAG00000024966
N
0.883
Ame_R009605
Ailuropoda melanoleuca
Ame_R009605
N
0.883
RAVER1
Monodelphis domestica
ENSMODG00000005584
N
0.830
RAVER1
Myotis lucifugus
ENSMLUG00000012328
N
0.733
RAVER1
Macropus eugenii
ENSMEUG00000003281
N
0.723
RAVER1
Anolis carolinensis
ENSACAG00000008386
N
0.723
raver1
Xenopus tropicalis
ENSXETG00000011622
N
0.700