srsf9 (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000026940 T42964_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.725
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.725
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.725
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000026703 RRM 18 87
ENSXETP00000026703 RRM 119 197

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

22 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
AAH84289 Xenopus laevis AAH84289 I 0.859
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.725
Srsf9 Mus musculus ENSMUSG00000029538 I 0.720
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.720
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.720
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.720
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.720
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.720
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.720
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.720
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.720
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.720
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.720
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.720
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.718
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.713
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.713
SRSF9 Homo sapiens ENSG00000111786 D 0.713
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.713
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.707
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.707
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.700