SRSF9 (Otolemur garnettii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOGAG00000003852 T39824_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.992
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.992
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.992
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.776
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.776
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.776
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.776
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.776
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.776
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.776
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.776
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.776
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.776
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOGAP00000003426 RRM 16 83
ENSOGAP00000003426 RRM 113 176

Links

Other RRM family RBPs
Other Otolemur garnettii RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF9 Sus scrofa ENSSSCG00000009906 I 1.000
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 1.000
Srsf9 Dipodomys ordii ENSDORG00000013162 I 1.000
SRSF9 Cavia porcellus ENSCPOG00000006813 I 1.000
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 1.000
SRSF9 Canis familiaris ENSCAFG00000010314 I 1.000
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 1.000
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 1.000
SRSF9 Microcebus murinus ENSMICG00000008674 I 1.000
Srsf9 Mus musculus ENSMUSG00000029538 I 0.992
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.992
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.992
SRSF9 Homo sapiens ENSG00000111786 D 0.992
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.992
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.992
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.977
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.977
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.962
SRSF9 Tupaia belangeri ENSTBEG00000008499 I 0.932
SRSF9 Tursiops truncatus ENSTTRG00000000145 I 0.924
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.910
SRSF9 Monodelphis domestica ENSMODG00000003146 I 0.910
AAH84289 Xenopus laevis AAH84289 I 0.806
AAI23123 Xenopus laevis AAI23123 I 0.782
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.782
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.782
Srsf1 Mus musculus ENSMUSG00000018379 I 0.782
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.782
LOC100056763 Equus caballus ENSECAG00000016654 I 0.782
SRSF1 Homo sapiens ENSG00000136450 D 0.782
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.782
SRSF9 Macropus eugenii ENSMEUG00000004069 I 0.782
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.782
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.782
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.782
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.782
AAI28932 Xenopus laevis AAI28932 I 0.782
AAH42354 Xenopus laevis AAH42354 I 0.782
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.782
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.782
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.782
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.782
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.782
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.782
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.782
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.782
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.774
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.774
srsf1a Danio rerio ENSDARG00000057691 I 0.774
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.767
SRSF1 Sorex araneus ENSSARG00000010949 I 0.767
SRSF9 Tetraodon nigroviridis ENSTNIG00000000697 I 0.767
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.767
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.767
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.767
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.767
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.767
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.767
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.767
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.767
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.767
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.767
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.767
SRSF9 Equus caballus ENSECAG00000009116 I 0.765
ISCW014398 Ixodes scapularis ISCW014398 I 0.759
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.752
SRSF9 Danio rerio ENSDARG00000008097 I 0.752
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.748
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.744
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.744
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.744
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.744
SRSF9 Erinaceus europaeus ENSEEUG00000011655 I 0.743
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.737
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.737
SRSF9 Loxodonta africana ENSLAFG00000006381 I 0.735
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.722
LOAG_10275 Loa loa LOAG_10275 I 0.722
srsf9 Xenopus tropicalis ENSXETG00000026940 I 0.720
SRSF1 Tetraodon nigroviridis ENSTNIG00000009993 I 0.716
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.714
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.714
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.707
186029 Helobdella robusta 186029 I 0.707
BGIBMGA013096 Bombyx mori BGIBMGA013096 I 0.707
LOC100400391 Callithrix jacchus ENSCJAG00000008111 I 0.707
DGIL_AUG5s14011g9t1 Acyrtosiphon pisum DGIL_AUG5s14011g9t1 I 0.707
ENSCING00000007375 Ciona intestinalis ENSCING00000007375 I 0.707