SRSF9 (Monodelphis domestica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMODG00000003146 T39061_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF9
M065_0.6 		Homo sapiens KGRWGSM RNAcompete
Ray et al.(2013)
RNCMPT00067 		0.917
SRSF9
M333_0.6 		Homo sapiens AGGAY SELEX
Cook et al.(2011)
797_17548433 		0.917
SRSF9
M072_0.6 		Homo sapiens AKGAVMR RNAcompete
Ray et al.(2013)
RNCMPT00074 		0.917
SRSF1
M351_0.6 		Homo sapiens AGGACAGAGC SELEX
Cook et al.(2011)
952_7543047 		0.776
SRSF1
M273_0.6 		Homo sapiens ACGCGCA SELEX
Cook et al.(2011)
243_7543047 		0.776
SRSF1
M272_0.6 		Homo sapiens RGAAGAAC SELEX
Cook et al.(2011)
242_7543047 		0.776
SRSF1
M270_0.6 		Homo sapiens Sequence logo not available GAAGAA CLIP-seq
Cook et al.(2011)
229_19116412 		0.776
SRSF1
M105_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00109 		0.776
SRSF1
M154_0.6 		Homo sapiens GGRGGAV RNAcompete
Ray et al.(2013)
RNCMPT00163 		0.776
SRSF1
M104_0.6 		Homo sapiens GGASGRV RNAcompete
Ray et al.(2013)
RNCMPT00108 		0.776
SRSF1
M106_0.6 		Homo sapiens AGGASM RNAcompete
Ray et al.(2013)
RNCMPT00110 		0.776
SRSF1
M103_0.6 		Homo sapiens GGAGGA RNAcompete
Ray et al.(2013)
RNCMPT00107 		0.776
SRSF1
M102_0.6 		Homo sapiens GRAGGA RNAcompete
Ray et al.(2013)
RNCMPT00106 		0.776
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000003831 RRM 12 79
ENSMODP00000003831 RRM 106 169

Links

Other RRM family RBPs
Other Monodelphis domestica RBPs

80 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SRSF9 Anolis carolinensis ENSACAG00000002877 I 0.924
Srsf9 Dipodomys ordii ENSDORG00000013162 I 0.910
SRSF9 Dasypus novemcinctus ENSDNOG00000012598 I 0.910
SRSF9 Sus scrofa ENSSSCG00000009906 I 0.910
SRSF9 Cavia porcellus ENSCPOG00000006813 I 0.910
Sfrs9 Rattus norvegicus ENSRNOG00000001163 I 0.910
SRSF9 Pteropus vampyrus ENSPVAG00000002229 I 0.910
SRSF9 Otolemur garnettii ENSOGAG00000003852 I 0.910
Ame_R019329 Ailuropoda melanoleuca Ame_R019329 I 0.910
Srsf9 Mus musculus ENSMUSG00000029538 I 0.910
SRSF9 Microcebus murinus ENSMICG00000008674 I 0.910
SRSF9 Canis familiaris ENSCAFG00000010314 I 0.910
SRSF9 Pan troglodytes ENSPTRG00000005535 I 0.902
SRSF9 Homo sapiens ENSG00000111786 D 0.902
SRSF9 Ochotona princeps ENSOPRG00000004234 I 0.902
ENSPPYG00000005031 Pongo pygmaeus ENSPPYG00000005031 I 0.902
SRSF9 Oryctolagus cuniculus ENSOCUG00000024603 I 0.902
A4FUC6_BOVIN Bos taurus ENSBTAG00000012792 I 0.895
ENSPPYG00000019910 Pongo pygmaeus ENSPPYG00000019910 I 0.887
SRSF9 Myotis lucifugus ENSMLUG00000010346 I 0.880
SRSF9 Tursiops truncatus ENSTTRG00000000145 I 0.865
SRSF9 Tupaia belangeri ENSTBEG00000008499 I 0.857
SRSF9 Macropus eugenii ENSMEUG00000004069 I 0.841
AAH84289 Xenopus laevis AAH84289 I 0.797
SRSF9 Gasterosteus aculeatus ENSGACG00000016921 I 0.795
SRSF9 Danio rerio ENSDARG00000008097 I 0.780
SRSF9 Tetraodon nigroviridis ENSTNIG00000000697 I 0.780
SFRS1_BOVIN Bos taurus ENSBTAG00000014766 I 0.761
SRSF1 Macaca mulatta ENSMMUG00000004725 I 0.761
AAI23123 Xenopus laevis AAI23123 I 0.761
AAI28932 Xenopus laevis AAI28932 I 0.761
SRSF1 Anolis carolinensis ENSACAG00000005542 I 0.761
SRSF1 Cavia porcellus ENSCPOG00000011760 I 0.761
AAH42354 Xenopus laevis AAH42354 I 0.761
SRSF1 Homo sapiens ENSG00000136450 D 0.761
SRSF1 Gorilla gorilla ENSGGOG00000004386 I 0.761
LOC100056763 Equus caballus ENSECAG00000016654 I 0.761
SRSF1 Loxodonta africana ENSLAFG00000025743 I 0.761
SRSF1 Choloepus hoffmanni ENSCHOG00000001899 I 0.761
ENSGACG00000020621 Gasterosteus aculeatus ENSGACG00000020621 I 0.761
SRSF1 Canis familiaris ENSCAFG00000017430 I 0.761
Ame_R003447 Ailuropoda melanoleuca Ame_R003447 I 0.761
srsf1 Xenopus tropicalis ENSXETG00000008954 I 0.761
SRSF1 Pan troglodytes ENSPTRG00000009443 I 0.761
D4A9L2_RAT Rattus norvegicus ENSRNOG00000042643 I 0.761
SRSF1 Tarsius syrichta ENSTSYG00000013899 I 0.761
SRSF1 Sus scrofa ENSSSCG00000017626 I 0.761
SRSF1 Procavia capensis ENSPCAG00000005199 I 0.761
ENSPPYG00000008240 Pongo pygmaeus ENSPPYG00000008240 I 0.761
Srsf1 Mus musculus ENSMUSG00000018379 I 0.761
gw1.25.268.1 Lottia gigantea gw1.25.268.1 I 0.754
srsf1a Danio rerio ENSDARG00000057691 I 0.754
SRSF1 Vicugna pacos ENSVPAG00000010094 I 0.754
SRSF1 Erinaceus europaeus ENSEEUG00000009255 I 0.746
SRSF1 Sorex araneus ENSSARG00000010949 I 0.746
SRSF1 Myotis lucifugus ENSMLUG00000011040 I 0.746
SRSF1 Spermophilus tridecemlineatus ENSSTOG00000000243 I 0.746
SRSF1 Microcebus murinus ENSMICG00000013639 I 0.746
ENSMUSG00000090049 Mus musculus ENSMUSG00000090049 I 0.746
ENSOCUG00000017678 Oryctolagus cuniculus ENSOCUG00000017678 I 0.746
ENSTNIG00000016223 Tetraodon nigroviridis ENSTNIG00000016223 I 0.746
LOC100392422 Callithrix jacchus ENSCJAG00000035311 I 0.746
SRSF1 Monodelphis domestica ENSMODG00000014781 I 0.746
ENSTRUG00000003691 Takifugu rubripes ENSTRUG00000003691 I 0.746
ISCW014398 Ixodes scapularis ISCW014398 I 0.746
ENSORLG00000004580 Oryzias latipes ENSORLG00000004580 I 0.733
ENSMMUG00000003260 Macaca mulatta ENSMMUG00000003260 I 0.731
SRSF1 Echinops telfairi ENSETEG00000005349 I 0.731
SRSF1 Tupaia belangeri ENSTBEG00000015378 I 0.724
SRSF1 Takifugu rubripes ENSTRUG00000017058 I 0.724
fgenesh2_pg.scaffold_118000083 Branchiostoma floridae fgenesh2_pg.scaffold_118000083 I 0.724
ENSGACG00000011094 Gasterosteus aculeatus ENSGACG00000011094 I 0.724
srsf9 Xenopus tropicalis ENSXETG00000026940 I 0.718
SRSF9 Equus caballus ENSECAG00000009116 I 0.711
e_gw1.83.149.1 Daphnia pulex e_gw1.83.149.1 I 0.709
e_gw.425.15.1 Branchiostoma floridae e_gw.425.15.1 I 0.709
LOC100392422 Callithrix jacchus ENSCJAG00000014041 I 0.709
nasonia_NCBI_hmm519234 Nasonia vitripennis nasonia_NCBI_hmm519234 I 0.701
fgenesh1_pg.scaffold_37000136 Nematostella vectensis fgenesh1_pg.scaffold_37000136 I 0.701
amel4_ncbi_hmm5595 Apis mellifera amel4_ncbi_hmm5595 I 0.701