cpo (Drosophila melanogaster)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 FBgn0000363 T42987_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
cpo
M125_0.6		 Drosophila melanogaster WGCACA RNAcompete
Ray et al.(2013)
RNCMPT00133 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M125_0.6 RRM 53 121

RNA Binding Domains

Protein ID Domain From To Sequence
FBpp0082958 RRM 453 521
FBpp0082961 RRM 453 521
FBpp0289474 RRM 453 521
FBpp0289475 RRM 453 520
FBpp0297679 RRM 453 521
FBpp0297680 RRM 453 521
FBpp0300609 RRM 453 520

Links

Other RRM family RBPs
Other Drosophila melanogaster RBPs

14 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
GL12579 Drosophila persimilis FBgn0150185 I 1.000
GD19192 Drosophila simulans FBgn0190697 I 1.000
GI23706 Drosophila mojavensis FBgn0146431 I 1.000
GM15269 Drosophila sechellia FBgn0170189 I 1.000
GH15012 Drosophila grimshawi FBgn0122487 I 1.000
GA16117-RA Drosophila pseudoobscura FBgn0076133 I 1.000
GF16747 Drosophila ananassae FBgn0093768 I 1.000
AGAP013145 Anopheles gambiae AGAP013145 I 0.985
CPIJ012174 Culex quinquefasciatus CPIJ012174 I 0.971
CpipJ_CPIJ012174 Culex pipiens CpipJ_CPIJ012174 I 0.971
XP_001190727.1 Strongylocentrotus purpuratus XP_001190727.1 I 0.757
XP_794412.2 Strongylocentrotus purpuratus XP_794412.2 I 0.757
e_gw.368.37.1 Branchiostoma floridae e_gw.368.37.1 I 0.704