CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
GJ21323
(
Drosophila virilis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0208454
T44096_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
Hrb27C
M090_0.6
Drosophila melanogaster
UAGGWUA
RNAcompete
Ray et al.(2013)
RNCMPT00093
0.979
Hrb27C
M028_0.6
Drosophila melanogaster
UAGGWWA
RNAcompete
Ray et al.(2013)
RNCMPT00028
0.979
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0235740
RRM
9
78
LFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPANVNHVLQSGPHTLDGRTID
FBpp0235740
RRM
98
168
VFLGGLPSNVTETDLRTFFGRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEI
Links
Other
RRM
family RBPs
Other
Drosophila virilis
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GH13720
Drosophila grimshawi
FBgn0121196
I
0.993
GG10443
Drosophila erecta
FBgn0102752
I
0.986
GK24781
Drosophila willistoni
FBgn0226741
I
0.986
Hrb27C
Drosophila simulans
FBgn0083432
I
0.986
GA10287-RA
Drosophila pseudoobscura
FBgn0070345
I
0.986
GE14209
Drosophila yakuba
FBgn0231830
I
0.986
GF15435
Drosophila ananassae
FBgn0092460
I
0.986
GM16252
Drosophila sechellia
FBgn0171168
I
0.986
GI24040
Drosophila mojavensis
FBgn0146763
I
0.986
GL26194
Drosophila persimilis
FBgn0163776
I
0.979
Hrb27C
Drosophila melanogaster
FBgn0004838
D
0.979
amel4_ncbi_hmm9281
Apis mellifera
amel4_ncbi_hmm9281
I
0.816
nasonia_NCBI_hmm120503
Nasonia vitripennis
nasonia_NCBI_hmm120503
I
0.803
PHUM115070
Pediculus humanus
PHUM115070
I
0.801
DGIL_AUG5s520g11t1
Acyrtosiphon pisum
DGIL_AUG5s520g11t1
I
0.801
AAEL008257
Aedes aegypti
AAEL008257
I
0.787
CpipJ_CPIJ015262
Culex pipiens
CpipJ_CPIJ015262
I
0.787
CPIJ015262
Culex quinquefasciatus
CPIJ015262
I
0.787
AGAP001930
Anopheles gambiae
AGAP001930
I
0.738
estExt_fgenesh1_pg.C_230134
Daphnia pulex
estExt_fgenesh1_pg.C_230134
I
0.730