estExt_fgenesh1_pg.C_230134 (Daphnia pulex)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_230134 T50544_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Hrb27C
M090_0.6 		Drosophila melanogaster UAGGWUA RNAcompete
Ray et al.(2013)
RNCMPT00093 		0.738
Hrb27C
M028_0.6 		Drosophila melanogaster UAGGWWA RNAcompete
Ray et al.(2013)
RNCMPT00028 		0.738
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_230134 RRM 22 91
estExt_fgenesh1_pg.C_230134 RRM 117 186

Links

Other RRM family RBPs
Other Daphnia pulex RBPs

20 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
nasonia_NCBI_hmm120503 Nasonia vitripennis nasonia_NCBI_hmm120503 I 0.782
amel4_ncbi_hmm9281 Apis mellifera amel4_ncbi_hmm9281 I 0.766
PHUM115070 Pediculus humanus PHUM115070 I 0.764
DGIL_AUG5s520g11t1 Acyrtosiphon pisum DGIL_AUG5s520g11t1 I 0.764
CpipJ_CPIJ015262 Culex pipiens CpipJ_CPIJ015262 I 0.757
CPIJ015262 Culex quinquefasciatus CPIJ015262 I 0.757
AAEL008257 Aedes aegypti AAEL008257 I 0.757
GM16252 Drosophila sechellia FBgn0171168 I 0.738
GK24781 Drosophila willistoni FBgn0226741 I 0.738
GE14209 Drosophila yakuba FBgn0231830 I 0.738
GH13720 Drosophila grimshawi FBgn0121196 I 0.738
Hrb27C Drosophila simulans FBgn0083432 I 0.738
GA10287-RA Drosophila pseudoobscura FBgn0070345 I 0.738
Hrb27C Drosophila melanogaster FBgn0004838 D 0.738
GG10443 Drosophila erecta FBgn0102752 I 0.738
GF15435 Drosophila ananassae FBgn0092460 I 0.738
GL26194 Drosophila persimilis FBgn0163776 I 0.732
GJ21323 Drosophila virilis FBgn0208454 I 0.730
GI24040 Drosophila mojavensis FBgn0146763 I 0.730
AGAP001930 Anopheles gambiae AGAP001930 I 0.714