CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CG7903
(
Drosophila melanogaster
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0039730
T43084_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG7903
M135_0.6
Drosophila melanogaster
HWUGCGR
RNAcompete
Ray et al.(2013)
RNCMPT00144
(Direct)
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M135_0.6
RRM
7
68
VFVGSLPRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKGQPIV
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0084973
RRM
7
68
VFVGSLPRCKPEELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKGQPIV
Links
Other
RRM
family RBPs
Other
Drosophila melanogaster
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM12198
Drosophila sechellia
FBgn0167135
I
1.000
GG11980
Drosophila erecta
FBgn0104272
I
0.984
GE10405
Drosophila yakuba
FBgn0228270
I
0.984
GF16214
Drosophila ananassae
FBgn0093236
N
0.721
GI21968
Drosophila mojavensis
FBgn0144697
N
0.706