CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GE10405
(
Drosophila yakuba
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0228270
T44265_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CG7903
M135_0.6
Drosophila melanogaster
HWUGCGR
RNAcompete
Ray et al.(2013)
RNCMPT00144
0.984
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0255415
RRM
7
68
VFVGSLPRCKPDELRRLFTNYGSVVECDVMNRCAFVHLENTDMAEAAIAALNGTIFKGQPIV
Links
Other
RRM
family RBPs
Other
Drosophila yakuba
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GG11980
Drosophila erecta
FBgn0104272
I
1.000
GM12198
Drosophila sechellia
FBgn0167135
I
0.984
CG7903
Drosophila melanogaster
FBgn0039730
D
0.984
GK14083
Drosophila willistoni
FBgn0216089
N
0.706
GF16214
Drosophila ananassae
FBgn0093236
N
0.706