CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
GG19249
(
Drosophila erecta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0111454
T43388_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0137795
RRM
7
75
FLADLPTRTSESDLQSLFQDYGHVEHVDLKRKEQDGGTKVIAFVTVQTDDAQYCVNELNWQKLHGEKLR
Links
Other
RRM
family RBPs
Other
Drosophila erecta
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM22984
Drosophila sechellia
FBgn0177852
N
0.971
GD17457
Drosophila simulans
FBgn0189010
N
0.957
CG14230
Drosophila melanogaster
FBgn0031062
N
0.957
GE15868
Drosophila yakuba
FBgn0233429
N
0.913
GF20211
Drosophila ananassae
FBgn0097218
N
0.720