CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GD12899
(
Drosophila simulans
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0184624
T43925_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0211301
RRM
125
165
LVLKSTKPRQKHARFCLVNFKSKEDRDQAFKDIKDSIKTDE
FBpp0211301
RRM
220
283
VVITNLPKTSSLAQVRQLFNDQAVDIQIRPGKGKFREYSTATVTLPTTHDARKAIKEKLSLAGT
Links
Other
RRM
family RBPs
Other
Drosophila simulans
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GM24847
Drosophila sechellia
FBgn0179709
N
0.953
GG14013
Drosophila erecta
FBgn0106275
N
0.933
CG18178
Drosophila melanogaster
FBgn0036035
N
0.914
GE21215
Drosophila yakuba
FBgn0068368
N
0.914
GL17875
Drosophila persimilis
FBgn0155478
N
0.782
GA14827-RA
Drosophila pseudoobscura
FBgn0074854
N
0.782
GF25131
Drosophila ananassae
FBgn0102123
N
0.727