CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_002887117.1
(
Arabidopsis lyrata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh2_kg.2__1062__AT1G67950.2
T44502_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.2__1062__AT1G67950.2
RRM
32
98
VKISNVSLLVSKKDIKEFFSFSGDIQFLEMRSETQESQAAYVTFKDPQGAQTAMLLTGAVIADLRVS
Links
Other
RRM
family RBPs
Other
Arabidopsis lyrata
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
AT1G67950
Arabidopsis thaliana
AT1G67950-TAIR-G
N
0.896
PDK_20s1373891g001
Phoenix dactylifera
PDK_20s1373891g001
N
0.731
Cucsa.322000
Cucumis sativus
Cucsa.322000
N
0.701