CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSVIVG00015463001
(
Vitis vinifera
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSVIVG00015463001
T44670_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSVIVT00015463001
RRM
9
78
IYVGGLPYNATEDSIRKVFNLYGAIVAVKIINERGVGGKCYGFVTFTNPRSAIDAINDMNGRDIDGRIVV
Links
Other
RRM
family RBPs
Other
Vitis vinifera
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma05g08160.1
Glycine max
Glyma05g08160.1
N
0.786
Glyma17g12730.1
Glycine max
Glyma17g12730.1
N
0.771
Cucsa.116130
Cucumis sativus
Cucsa.116130
N
0.771
cassava24191.valid.m1
Manihot esculenta
cassava24191.valid.m1
N
0.771
Medtr8g118890
Medicago truncatula
Medtr8g118890
N
0.757
29807.m000475
Ricinus communis
29807.m000475
N
0.714