CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SB01G034590
(
Sorghum bicolor
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Sb01g034590
T45895_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb01g034590.1
RRM
59
129
LLIRNISLTARPEDIRVPFEQFGPIKDVYLPRNFHTRELRGFGFVKFRYPEDAAVAKQEMNHQVIGGREIS
Links
Other
RRM
family RBPs
Other
Sorghum bicolor
RBPs
12 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LOC_Os03g24890
Oryza sativa
LOC_Os03g24890
N
0.944
BGIOSIBCE011211
Oryza indica
BGIOSIBCE011211
N
0.944
BRADI1G61730
Brachypodium distachyon
BRADI1G61730
N
0.887
GSVIVG00022010001
Vitis vinifera
GSVIVG00022010001
N
0.732
mgf013231m
Mimulus guttatus
mgf013231m
N
0.732
cassava19116.valid.m1
Manihot esculenta
cassava19116.valid.m1
N
0.718
cassava19117.valid.m1
Manihot esculenta
cassava19117.valid.m1
N
0.718
Cucsa.253680
Cucumis sativus
Cucsa.253680
N
0.718
A9PDA2_POPTR
Populus trichocarpa
POPTR_0010s02700
N
0.704
ppa010343m
Prunus persica
ppa010343m
N
0.704
29726.m003960
Ricinus communis
29726.m003960
N
0.704
ppa010360m
Prunus persica
ppa010360m
N
0.704