CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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cwf29
(
Schizosaccharomyces pombe
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SPBC887.05c
T46211_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SPBC887.05c-1
RRM
33
103
IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVR
Links
Other
RRM
family RBPs
Other
Schizosaccharomyces pombe
RBPs
16 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SOCG_02705
Schizosaccharomyces octosporus
SOCG_02705
N
0.873
SPOG_02298
Schizosaccharomyces cryophilus
SPOG_02298
N
0.859
SJAG_00313
Schizosaccharomyces japonicus
SJAG_00313
N
0.789
PKH_082150
Plasmodium knowlesi
PKH_082150
N
0.732
PVX_095260
Plasmodium vivax
PVX_095260
N
0.732
PredSwiss_CON1238.1
Pneumocystis carinii
PredSwiss_CON1238.1
N
0.718
UREG_03685
Uncinocarpus reesii
UREG_03685
N
0.718
ANIA_04665
Aspergillus nidulans
CADANIAG00005768
N
0.704
PABG_03870
Paracoccidioides brasiliensis
PABG_03870
N
0.704
CIMG_06780
Coccidioides immitis
CIMG_06780
N
0.704
Pc22g16450
Penicillium chrysogenum
Pc22g16450
N
0.704
PCHAS_080610
Plasmodium chabaudi
PCHAS_080610
N
0.704
BDBG_01138
Blastomyces dermatitidis
BDBG_01138
N
0.704
PBANKA_080580
Plasmodium berghei
PBANKA_080580
N
0.704
CPSG_07351
Coccidioides posadasii
CPSG_07351
N
0.704
HCAG_00719
Histoplasma capsulatum
HCAG_00719
N
0.704