CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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NOP13
(
Saccharomyces cerevisiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
YNL175C
T46362_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
YNL175C
RRM
127
147
VWIGNLSFDTTKDDLVRFFIA
YNL175C
RRM
160
213
TEQDITRLSMPRVAAKNSNAMKNKGFCYMFFKNVEQMKAVLELSESHLNGRNML
YNL175C
RRM
241
311
LFVGNLSFDVTDDLLRKHFQHCGDIVKIRMATFEDSGKCKGFAFIDFKNEEGSTNELKDKSCRKIAGRPLR
Links
Other
RRM
family RBPs
Other
Saccharomyces cerevisiae
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
18688_YNL175C
Saccharomyces paradoxus
18688_YNL175C
N
0.973
20286_YNL175C
Saccharomyces bayanus
20286_YNL175C
N
0.945
18240_YNL175C
Saccharomyces mikatae
18240_YNL175C
N
0.939
A7TL72_VANPO
Vanderwaltozyma polyspora
A7TL72_VANPO
N
0.728
KLTH0B06886g
Kluyveromyces thermotolerans
KLTH0B06886g
N
0.714
SAKL0E12738g
Lachancea kluyveri
SAKL0E12738g
N
0.705